Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55070 605 / 0 LisH/CRA/RING-U-box domains-containing protein (.1.2) AT4G37880 120 / 2e-30 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 105 / 4e-25 zinc ion binding (.1.2) AT5G09630 101 / 2e-23 LisH/CRA/RING-U-box domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128600 [exp] 117 / 5e-29 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 116 / 6e-29 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 116 / 6e-29 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 115 / 1e-28 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.010G213950 [exp] 0 / 1 AT3G55070 0 / 1 LisH/CRA/RING-U-box domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030305 [exp] 676 / 0 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 665 / 0 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10020487 [exp] 115 / 2e-28 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10002832 [exp] 100 / 7e-23 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 94 / 5e-21 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 92 / 2e-20 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10019837 [exp] 73 / 6e-14 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10007106 [exp] 50 / 3e-06 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [poplar] [flax] CLTH CTLH/CRA C-terminal to LisH motif domain CL0229 [poplar] [flax] RING PF13445 [poplar] [flax] zf-RING_UBOX RING-type zinc-finger
Representative CDS sequence Show only first row Show all	>Potri.008G047300.1 pacid=42807713 polypeptide=Potri.008G047300.1.p locus=Potri.008G047300 ID=Potri.008G047300.1.v4.1 annot-version=v4.1 ATGGAAATGGACTCCCTCCCTAACGGCAACTCCACAATCCCAACCACAATAATCCCAACCACCACTCCGTCAACGGCTCTGTCCTCAAAACTGACGCAAC TGACTGAATCTTTGAAACTAGAACACCAGTTCTTGCGGGTTCCTTTCGAACACTACAAGAAAACGATCCGTACCAACCACCGCGCCGTAGAAAAGGAAGT CTCTTCCGTTATCTCCGTCGTTAATGACGCCGCTGACTCTGACATCTCCAACGACGATGCCGTTCAGCATCTCACTTCTCTCGTTTCCAGATTGCAAGGT CTTAAAAGAAAGTTGGAAGAGGGAAGCCGGACAGAGAACTTACAAGCGCAGAGGTGTCGTGCACGGATCGATCATTTAGAATCAGCTGATGCGGAGAATC TATCAGAGTGGAATAACATGCGGATGAAGCGGATTCTTGTGGATTATATGCTACGAATGTCGTATTACGATACTGGATTGAAGCTAGCTGAAAGCAGCGA TATGCTGGATCTTGTTGACATTGATGTATTTTTGGAGTCGAAAAGGGTTATTGATGCTCTTCAAAAAAGGGAGGTTGCTCCTGCTTTAGCATGGTGTGCT GATAACAAAACAAGGTTGAAGAAGTCAAAGAGCAAATTTGAGTTCCAGTTGAGACTTCAAGAATATGTAGAGTTAGTACGAGCAGAAGACCACCTGCGTG CCATTACATATGCTCGGAAGTATCTCGCACCATGGGCAGCAACGCATATGAAAGAAATGCAGCGGGTCTTTGCAATAGTGGCTTTTAAGAGCAATCCTGA ATGTGCTGTATATAAGGTTTTTTTCGAACCAAAGCAATGGGACTACTTGGTAGAACAATTTAAACAGGAATTCTGCAGGTTATATGGCATGACTCTAGAG CCGTTGCTGAATATATTTCTACAGGCAGGGTTATCCGCCCTGAAAACTCCCTACTGTTATGAAGATGATTGCACCAAGGAAGATCCACTGTCACAGGAGA GCTTCAGGAAGTTGGCATTGCCATTACCGTACTCAAAGCAGCACCACTCAAAGCTTGTTTGCTACATAACTAAAGAACTAATGGACACAGAGAACCCACC CCAAGTCTTGCCTAACGGCTATGTTTACAGCACTAAGGCACTTGAAGAAATGGCCAAGAGAAATGATGGTAAAATAACCTGTCCAAGGACAGGTTTAGTC TGCAACTATTCGGAGGTGGTGAAGGCATTTATATCATAA
AA sequence Show only first row Show all	>Potri.008G047300.1 pacid=42807713 polypeptide=Potri.008G047300.1.p locus=Potri.008G047300 ID=Potri.008G047300.1.v4.1 annot-version=v4.1 MEMDSLPNGNSTIPTTIIPTTTPSTALSSKLTQLTESLKLEHQFLRVPFEHYKKTIRTNHRAVEKEVSSVISVVNDAADSDISNDDAVQHLTSLVSRLQG LKRKLEEGSRTENLQAQRCRARIDHLESADAENLSEWNNMRMKRILVDYMLRMSYYDTGLKLAESSDMLDLVDIDVFLESKRVIDALQKREVAPALAWCA DNKTRLKKSKSKFEFQLRLQEYVELVRAEDHLRAITYARKYLAPWAATHMKEMQRVFAIVAFKSNPECAVYKVFFEPKQWDYLVEQFKQEFCRLYGMTLE PLLNIFLQAGLSALKTPYCYEDDCTKEDPLSQESFRKLALPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKRNDGKITCPRTGLV CNYSEVVKAFIS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55070			LisH/CRA/RING-U-box domains-co...		Potri.008G047300 [exp]	0	1
AT3G62550			Adenine nucleotide alpha hydro...		Potri.002G196700 [exp]	2.00	0.9144
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.012G023700 [exp]	12.12	0.8738
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	13.22	0.8743
AT3G26580			Tetratricopeptide repeat (TPR)...		Potri.013G090000 [exp]	14.28	0.8789
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	14.38	0.8662
AT5G18130			unknown protein		Potri.013G057200 [exp]	15.49	0.8742
					Potri.008G036000 [exp]	17.94	0.8512
AT3G27250			unknown protein		Potri.001G334500 [exp]	18.16	0.8312
AT4G27290			S-locus lectin protein kinase ...		Potri.011G035913 [exp]	19.18	0.8587
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	22.22	0.8567

Compare expression of checked genes

Potri.008G047300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.