Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55080 511 / 2e-179 SET domain-containing protein (.1.2) AT3G07670 109 / 1e-25 Rubisco methyltransferase family protein (.1) AT1G14030 100 / 2e-22 Rubisco methyltransferase family protein (.1) AT5G14260 70 / 1e-12 Rubisco methyltransferase family protein (.1.2.3) AT1G01920 52 / 5e-07 SET domain-containing protein (.1.2) AT3G56570 52 / 6e-07 SET domain-containing protein (.1) AT1G24610 52 / 8e-07 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169300 [exp] 108 / 2e-25 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 103 / 2e-23 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G151351 [exp] 57 / 2e-10 ND / Potri.008G134200 [exp] 62 / 6e-10 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.017G066500 [exp] 61 / 7e-10 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.004G135700 [exp] 56 / 3e-08 AT3G56570 446 / 9e-153 SET domain-containing protein (.1) Potri.014G077700 [exp] 47 / 2e-05 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.006G168900 [exp] 44 / 0.0002 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040345 [exp] 560 / 0 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10023469 [exp] 216 / 9e-67 AT3G55080 204 / 4e-64 SET domain-containing protein (.1.2) Lus10012309 [exp] 100 / 2e-22 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 88 / 3e-18 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10036780 [exp] 85 / 3e-17 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10013825 [exp] 64 / 1e-10 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10021783 [exp] 61 / 1e-09 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10034599 [exp] 54 / 2e-07 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016435 [exp] 54 / 2e-07 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF09273 [poplar] [flax] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Potri.008G047400.5 pacid=42808279 polypeptide=Potri.008G047400.5.p locus=Potri.008G047400 ID=Potri.008G047400.5.v4.1 annot-version=v4.1 ATGCTTGCGTGCGTTTTCTTCTCTAAATATCCGCAAATGCTATCACGCTCTCGCTTCATAAATCCACGGCGGTCTCTTCTTCAGCTATTCACCGCCGCTC ATCGCTTCTCCAAGAAACTAAATTTCTCCTCCTCTCCCGCTCCAGAGGTACTGTTAAATCATCTAGACGAGGAATGCGTTGATTTTTTGCCGTGGTTGGA AAGGAAAGCTGGAGTCGAAATTTCTTCAAAGCTTTACGTTGGCAAATCCGCGTACGGCAGGTCACTGTTTGCTTCTAAAAGCATACAAACTGGAGAATGC ATAATGAGAGTCCCATACAACGTGCAAATAGCACCAGATAATCTACTTCCGAAAGTTGCATCTTTGTTAGACAATGAAGTTGGCAATGTTGCAAAGCTTG CTATTGTCATTTTGATTGAGCAGAAAAGAGGGCAGGAATCGGAGTGGGCCCCTTATATCAGCTGCCTACCTTGGCCTAGAGAAATGCATAGCACGATATT TTGGAGCAAAAGTGAGTTGGACATGATTCATCAAAGCACAGTATACCAAGAAACAATCAAAGAAAAATATCAAATCGAAAAGGATTTCTTGAAAATTAAA TCAGCTCTCGATCACTCCCCAGAAATTTTAGATGGTATCACACTTGAGGATTTCATGCATGCATATGCTTTAGTTAGATCTCGAGCATGGGGAAGCACAA GGGGGGTATCCCTGATTCCATTTGCAGACTTTTCAAACCACGATGGGGTTTCTGAAGCATTCGTATTAAATGATGAAGACAAACAGGTCTCAGAGGTCAT TGCTGATCGTAATTTTGCTCCTCATGAAGAGGTGCTGATCAGATATGGAAAATTTTCAAATGCTACCTTGCTGTTGGAATTCGGATTTATAGTTCCACAC AACATCCATGACCAGGTCCAGATTCACATTGACGTGCCCAATCATGATTTTCTAGGTGAAATGAAGTTGGATATTTTACGAAGGCATCATTTACCAACCA CAAGATATGCTAATGACTTCAAGTTTTCTGGGGATTCTTTCATAATCAAGGAAGTGAGGTCCGCTAGAGGCAAAGGAAAAGGTCTGCCACAATCACTACG TGCATTTGCTCGTGTTCTTTGTTGCAACTCTTCTCAAGATTTAATTGATTTGGCCATGGAAGCTGCACAAAATGATGGTCGTTTAGCTCGACGCCCTTTA AAAAATAGCAGCAGGGAGATCCAAGCACATGAGATCCTGTTGTCAAGAATCAGTCAACTTATTGAGGAATATAATGTATCTATGAAGTCATTGGAACCTG TTGCTGCTTCTGTGTGCAAAAGATTTGCTCTTCGAAGGCAGATGGCTCTAGATCTCCTCACTGGTGAGCTTCGTGTCCTTGAATCTGCATACACATGGCT GAATAATTACTGTGCTACCTTGTTACAGCATTCCACTACCAATGATGATGCCAGTGCCTGTGGGAATATTCGGGAATGA
AA sequence Show only first row Show all	>Potri.008G047400.5 pacid=42808279 polypeptide=Potri.008G047400.5.p locus=Potri.008G047400 ID=Potri.008G047400.5.v4.1 annot-version=v4.1 MLACVFFSKYPQMLSRSRFINPRRSLLQLFTAAHRFSKKLNFSSSPAPEVLLNHLDEECVDFLPWLERKAGVEISSKLYVGKSAYGRSLFASKSIQTGEC IMRVPYNVQIAPDNLLPKVASLLDNEVGNVAKLAIVILIEQKRGQESEWAPYISCLPWPREMHSTIFWSKSELDMIHQSTVYQETIKEKYQIEKDFLKIK SALDHSPEILDGITLEDFMHAYALVRSRAWGSTRGVSLIPFADFSNHDGVSEAFVLNDEDKQVSEVIADRNFAPHEEVLIRYGKFSNATLLLEFGFIVPH NIHDQVQIHIDVPNHDFLGEMKLDILRRHHLPTTRYANDFKFSGDSFIIKEVRSARGKGKGLPQSLRAFARVLCCNSSQDLIDLAMEAAQNDGRLARRPL KNSSREIQAHEILLSRISQLIEEYNVSMKSLEPVAASVCKRFALRRQMALDLLTGELRVLESAYTWLNNYCATLLQHSTTNDDASACGNIRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	0	1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	1.00	0.8323
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	4.00	0.8084
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	6.78	0.8148
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	7.00	0.7991
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	7.41	0.8073
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	13.03	0.7868
AT4G34280			transducin family protein / WD...		Potri.001G297600 [exp]	14.07	0.7517
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	15.29	0.7696
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	15.42	0.7695
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	17.54	0.7056

Compare expression of checked genes

Potri.008G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.