Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13590 146 / 4e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213800 [exp] 1852 / 0 AT5G13590 176 / 2e-44 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G047600.5 pacid=42806484 polypeptide=Potri.008G047600.5.p locus=Potri.008G047600 ID=Potri.008G047600.5.v4.1 annot-version=v4.1 ATGCCGGTGTCAGGAAATGAAGAGACTGGGGTTAAACCCCATGCCCAGCAGTCTAGTCTTAACATTGCAGGTGTTCCTATCAAGAAAAGGAGGTTCATCT GGCCTCCTTCGCCTCCACCAGAAGAACAATCTGTGCCACTGTTGGGAAATGATTCTGCACAGAAAGAACCTGGCAGCACATCTAAGGAGTCAAGTCCTTC CAATTCTAGTGTTGCAGCGAGTTCTGATTTATCTGATCCATTCAAGAATTCTGTAGCTGAAGAAAATAAGAACAGGTTGGACAGCATTGTGCAAATGAAT GCTGAGAACTGCTCAGGAGTTAAAGTTGTAGCACAGAACCTTGCAACCCATTCTGATTCTTTGGCTAAGTTTGGCAAACAAGAGAAGCCCGTGGTGGAAG AAAAGTCTGCCAACACATTGTTGATTTCAGCGAAAACTGAGTTGAATTTAGAATCCAATAAAGGTCCTGGACTCAATGTTGGTAAAGAGATATGCGGCCA ACAAATATTGGAAGGAAAGTGTAAATCAGAGATGCCTATAGCTTCAGTAACTTCTCAGTTTTCTTTAGGTTTAAAGGAACACGATGTTTCATCTTTGGAA TGTTATAGCAATGATGGTAGTCAAATTAATGAAAATGTAGGAGCTGTTTCATTGAATTTGTCTTTAAGCGAGGGTGAGACTGGTGTTCTGCACAAAATGG ACAATATTCTTGCTACCGACAGCACTGATGTTTTTGCTAACAGATCGAACTGGGATTTGAATACTACTATGGATACATGGGATGGTTCTTCTAGTGATGA ACATGCTGCTCAAGAAACTGCTGATGGGTGGAACAGAGTTGGTGTCAAATGTGATATTACTACTGGAATAGTTGGAGCTGGTATGTCTAATGGAAGGCAA CTCCTTGATAGCAGTGAGTGCAAATCTAGTTTCCCCCAAACATTTTCTGATTGTGCCAGGGAGTATACATCTGAGGATTCTCTTCATCTTCGTCTCAGTC CATCCTTTCCTTCTTTTAACTTAAGCCAGGAGCATTCCAGTTCTTCTGCTAATAAAGAAAGCTGCATTATTCCTAACATTAGCTTGCCTGGAAGCTTGTT GTCAGCAGGCAATGCAACCGTGGCTAACTGTAGGGGCATAAAATCAGAACCATTTGATGGGAGCCTCAAACATGATCTTAGAGGAGCCAAAGTCAATCCA TTTGATTTTTTTGTTAAGCGCGAGTTAGTAGAGAAGGGTAGTCTAGAAACCTCGAAGTCGTCAGCTTCTGGTTCTTTGAAATTAGTTGGTCATGGATTCA TAAAACCAGAACCATTTCATGATGGCAAACCAGAAACACCCAGGATGGTAGGTGGGGGGTCAATCCAACCTGATAAACAGGTGCTACAAAGTCAGGATAC TGGAGAGCAATCTCCTTGTTCAGCAAGTAAAATCGTGCTGCAAGTTCAGGATACTACAGGACAACCTTCATGTTCAACAGATAACCAGGTGAGGGAAGGT CAAGATATCTTAGCAAAACCTACTTCTTCAACAGATTTGTTTATAAGTGGCAATGCATCAGACCGATTAGAGTATACCACATGTGTTGAAGGTGCCCTTC TTAGGAACGCTATGCCAAAGGAAGCACCTGAAAGTGCTGGGCAGGTTTCTTCAGAAATGGTTTCTATGCCTGTAGGTCACAGTGGTGAGGAATTAGATGC TTCTGTTAAGATAGATACTGCAATTACTATGGACAGAAATGGTGATGCCCCGGAGCAGTGTGAACTGAAAATTACAGAGGAAGTCCCTGCAGGTTCACAT GGAAATGGTGAGGCTTCTGTAACCGATGAGGAAAAGATTAACTTGTCTGGTGATATGATAGAAGAAGATTCTTATGGCTCTGGCTATGAGTCCGATGGTA ATACTATGTCTATGGATATAGATGAAGAGCAGCGAGAACACAAGTATGAAGATGGCGAGGTCCAAGACCCGCATCTGCAAGCTGCGGAAGAGTGTCAGAA ATGTGAGGAAAAAGATGTTAGTCATGGTAATTCTGAACATGAAAAGGCAAACTCTGGACTTGCTGGTGATGATCATTATATTTCATCCCTTGTTGAGGAA AATGATTCTAAAATAGAACTTTCTGAAAACAATGAAGTTACTGTGAAAGAATGCATCACCAGAACCATTGAAGATGCTGATAATGCTTCTGTGAAAGAAT CACCAACAGTTGAGATGTCAACTTGTGGGGCAGAGCAAGAGAGGGAAACCACAATCATTCAAAGAAAATCACTTGACTTATCTGGAAAGAAAGATTGTCC TGTGGGCCAGGGGACAGAACTGTCATCTGGACAAGACATTACTGCAGGTCAAGGGGTTTTAGTTTCTGTTGAGCAAGGTTCAGACGAGAACATTAAAACA AATTACATGGAAAAGAATGAGTTGCCTGAGTTAGAGGCATCTTTAAATGGTGGTGATATGGCTAAGGATGTCAGCAGCAGCCGGAGTAGGATTATAAACT TGCCTAGAGCTTCTAATTCATCATCTCCTGGCAAGACAAGATCTATATCAGGCAGGCCTTTTTCATCATATCAAGAAAGATTACCTGACGGGCCGCTTGA GGGTGGAAAACTACATCCCCAAGGGAGGGATGAAATATATATTGATGGTCCTCGCAGATTCTCAAGAGATAGACACCAAGAGCATTTTCCCAGAAACTCT AGAATGAATTTTGTCCGTGGTAGAGGGAGGATTTCCAGCCGGGTTGACACTCTTCGTGGTGACAGGGATTCTGAACGTAACTATGCTTCAGAATTTTACA ATGGTTCATCAGATTTTGCTGTTCGCAGGCATAAATATGCTTCTGCTGCTGCTGAGGCTGATTCTGAATCTATTAATTATAATATCGCACCAGATGGTTC ATTTGTAGGTACTGCACGGGGAGGGAGGAAGCTACTGGATGATGAGACACCAGTTTTCCGCAATGTACCCTCAAGGAGGCGGTCTCCTGAAGGGAGAGAT GTGCCTGCTGCACGAGGCATTCAAATGGTGCATAGAGTTCCTCGAAACATTGGCGAAGAGGGTTCTGAAGTTATTGGAGCAAGGCACACTGAGAATATGA GGGGATTCCCTGATGATGGTACAGAGCAGGCATTTAGGCGACCCCAACCTTCATACGAAGGGTTAGATGGTCATTTTGTCCAAGGGACTAGGAACTATTC ATCTGTTCATAGAAGGGCTCTTCCCCAATTTCGTTCAAAATCTCCAATTAGATCTCGTTCTCCTGGTCCATGGTCATCTGCCAGAAGAAGATCTCCAGAT GGGTTTGGTGGGACTTCAGAATTGTCTAATCGAAGATCACCAATTTACAGTATGGGGAGGATCAGATCACCTGACCATCCTGGTTTTCCCAGGGAAATGG TTGTTAGGAGGCACGGTTCTCCACCATTCTTATCTCGACCTCCTGATACCAGGGAAACAGATCCTGGTCATTCAAGGTCTATTATCTCTAATAGGGGCCA AACAGGAAGGGTTTTTCTCAGAAACAGTAGGAGGTTTGGTATTACAGATCCTCGAGAAAGGGCGGACAGTGATGAGTTCTTTGGAGGGCCCATACACTCT GGTCGATTTCATGACCTTGGTGGTGATGGGAATGTGGAAGATAGAAGAAGATTTAGCGAGAGGCGGGGACCTGTCCGTTCATTTAAGCCTCCTTTTAATG GTGCTGGTAGTGAAAATTTTCATCTTAATCCAGAGGATGGCCCCCGACCTTTTAGGTTCTTTCCGGAAGATAATCCAGAGTTCCATGAAAGAACTAATTT GAGGGAAAGGGAGTTTGATGGACGGATTAGGAACCGTCCTGGAAATGCACCCAGAAGACCCCGAGGCATTGAAGAGCAGGAAGGAAATTACAGGCATGGT AGGCAGGTATTGTATGATGATGGGTTTGATATTTCACGAATGAAAAGGAAAAGGTTTTAA
AA sequence Show only first row Show all	>Potri.008G047600.5 pacid=42806484 polypeptide=Potri.008G047600.5.p locus=Potri.008G047600 ID=Potri.008G047600.5.v4.1 annot-version=v4.1 MPVSGNEETGVKPHAQQSSLNIAGVPIKKRRFIWPPSPPPEEQSVPLLGNDSAQKEPGSTSKESSPSNSSVAASSDLSDPFKNSVAEENKNRLDSIVQMN AENCSGVKVVAQNLATHSDSLAKFGKQEKPVVEEKSANTLLISAKTELNLESNKGPGLNVGKEICGQQILEGKCKSEMPIASVTSQFSLGLKEHDVSSLE CYSNDGSQINENVGAVSLNLSLSEGETGVLHKMDNILATDSTDVFANRSNWDLNTTMDTWDGSSSDEHAAQETADGWNRVGVKCDITTGIVGAGMSNGRQ LLDSSECKSSFPQTFSDCAREYTSEDSLHLRLSPSFPSFNLSQEHSSSSANKESCIIPNISLPGSLLSAGNATVANCRGIKSEPFDGSLKHDLRGAKVNP FDFFVKRELVEKGSLETSKSSASGSLKLVGHGFIKPEPFHDGKPETPRMVGGGSIQPDKQVLQSQDTGEQSPCSASKIVLQVQDTTGQPSCSTDNQVREG QDILAKPTSSTDLFISGNASDRLEYTTCVEGALLRNAMPKEAPESAGQVSSEMVSMPVGHSGEELDASVKIDTAITMDRNGDAPEQCELKITEEVPAGSH GNGEASVTDEEKINLSGDMIEEDSYGSGYESDGNTMSMDIDEEQREHKYEDGEVQDPHLQAAEECQKCEEKDVSHGNSEHEKANSGLAGDDHYISSLVEE NDSKIELSENNEVTVKECITRTIEDADNASVKESPTVEMSTCGAEQERETTIIQRKSLDLSGKKDCPVGQGTELSSGQDITAGQGVLVSVEQGSDENIKT NYMEKNELPELEASLNGGDMAKDVSSSRSRIINLPRASNSSSPGKTRSISGRPFSSYQERLPDGPLEGGKLHPQGRDEIYIDGPRRFSRDRHQEHFPRNS RMNFVRGRGRISSRVDTLRGDRDSERNYASEFYNGSSDFAVRRHKYASAAAEADSESINYNIAPDGSFVGTARGGRKLLDDETPVFRNVPSRRRSPEGRD VPAARGIQMVHRVPRNIGEEGSEVIGARHTENMRGFPDDGTEQAFRRPQPSYEGLDGHFVQGTRNYSSVHRRALPQFRSKSPIRSRSPGPWSSARRRSPD GFGGTSELSNRRSPIYSMGRIRSPDHPGFPREMVVRRHGSPPFLSRPPDTRETDPGHSRSIISNRGQTGRVFLRNSRRFGITDPRERADSDEFFGGPIHS GRFHDLGGDGNVEDRRRFSERRGPVRSFKPPFNGAGSENFHLNPEDGPRPFRFFPEDNPEFHERTNLREREFDGRIRNRPGNAPRRPRGIEEQEGNYRHG RQVLYDDGFDISRMKRKRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13590			unknown protein		Potri.008G047600 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	1.00	0.8372
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Potri.001G379800 [exp]	4.58	0.7323
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	6.32	0.8072
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	9.48	0.7874
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	9.48	0.7341
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.002G004600 [exp]	10.09	0.6945
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	10.77	0.7557
AT5G13590			unknown protein		Potri.010G213800 [exp]	11.40	0.7475
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	11.40	0.7131
					Potri.017G065550 [exp]	12.96	0.7029

Compare expression of checked genes

Potri.008G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.