Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39340 880 / 0 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G06290 59 / 2e-08 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G54380 46 / 9e-05 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213700 [exp] 1576 / 0 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G028200 [exp] 59 / 1e-08 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.001G035700 [exp] 48 / 3e-05 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030305 [exp] 1154 / 0 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 1079 / 0 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10012769 [exp] 59 / 2e-08 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10034008 [exp] 59 / 2e-08 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10024110 [exp] 48 / 3e-05 AT3G54380 412 / 1e-142 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF10075 [poplar] [flax] CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family
Representative CDS sequence Show only first row Show all	>Potri.008G047700.5 pacid=42808548 polypeptide=Potri.008G047700.5.p locus=Potri.008G047700 ID=Potri.008G047700.5.v4.1 annot-version=v4.1 ATGCTGATGATGAATCAAGGAGTTAATACGCAAACCATAGCTTCAGTTGACCCTAATTCACTTGAGGGTCGATATGTTGTTGATGTGAGCCAAGGGCAAA CATCTTCATATAATCCCACAGCATATGAGTCTGAAGCTGCACCATGGACCATGCATAGAGTGGATAATCACTCTACAGAGAATGGAATTCTTTCAAATTC CAGTTATCACCACGATCATCGAACACAGCAGCTTGCAAGAAGTGCCCAAGATAGTTTAAATACTGCATCCCTTGCTAGTTCATCGACTCAAGGAACAATG AGCGTAACCCAAGATCACAGTAGTTATGCAGCATACAATCCTACAGATCCATATGGTTATGGAAGCAGTGGATATTCAAGTTACTATAATAATGGTTATC AGCAGCAACCAAACCATGCATACTCACAGCAGCAACCAAGCCACTCATACTCTCAGCAGCAACCCAGCCACTCATACTCTCAGCAGCAACCCAGCCACTC GTACTCTCAGCAGCAACCCAGCCACTCGTACTCTTCAACTGGAGGGGCATATCAAAACACAGGTGCTCCTTATCAGCCTCTTTCCTCATTTCAGAATACA GGGTCTTATACTGGGACAACAAGTTATTCAACCACTTACTACAATCCTGGTGATTATCAGACAGCTGGAGGTTACCCAAGTAGTGGATACAGTAATCAGA CTTCCTTGTGGAATGATCCCAATAACGCAAATTATACATCTCAGCAGTATTCAACCTATGCTCCAGACACAACAAGTGCTTATAGTTCTGGTACTGCAGC CTCAACGTCAATGAACTACGAGCAGCATTACAAGCAATGGGCTGATTATTACAGTCAAACAGAAGTTAGTTGCGCTCCAGGGACAGAACACTTGTCTGCT GCTAGCACATCTAACCTGGGAAGTGCAGTGTCTGGTGTGTATCCTACTTCCAACACCCAACCTCCCGCGTCTTTCACCCCGGCATCTTGGAGGCCTGAAT CTGCATCATCTGAATTGCCATCTTTGCAGACCGGTGCAACTATCAGTAGCACTCATGATGGCTGGAAACAAGGGACTCCAAGTTTTCAAAATCACCATGC TAGTCCTACGCAACCACACTTTCAAATTTCTCATGAGTCAAAAGCTTCATATGATAATATTCAGGAACAACAACAGACTGCTCCACAAGCTCCTAATTCA CAATTTCCTGCAGCTCATCAGGCGACCCAGAGTTATCAATCAACTCTGCAAAATGCTTTATCTTTAGATACTCGAAGGGTAAGCAGAATGCAGATTCCAA CAAATCCTAGAATTGCTTCAAATTTGGCTTTGGGTTTATCAAAAACCGATAAGGATGGCCCTACGAACAGTGCAGCAGCAAAACCTGCTTATATCAGTGT GTCGATGCCAAAGCCAAATGACAAAGTGTTGTCTAATGATGCGACTAATTCCATGCTTAAGCCTGGAATGTTTCCTAACTCACTGCGTTGTTATGTTGAA AGAGCTTTCAATCTCTGTAAAGATGATACACAAAGGGTAGCTTGTCAGGCTATCATGAAGGAGATCATTACGAAGGCAACTGCTGATGGTACACTTAACA CTCGGGACTGGGATGCAGAGCCTCTTTTTGCAATACCAAATGCTGAGGCTGTCAATATGGATTCACAATGTCCCACTCCTGTTTCTTCATTACCAAGGTA TAAAAGGAGTCCAGGTAGACGATCTAAAAGTAGATGGGAGCCTTTACCAGAAGAGAAATCGGTTGATAAGCCTGTTTCCATCAGTAATGATATTGTAAAA TATGATGGTTGGGAAAGAAAGCCTCCAAGTGTGAATTCTGAGAGCAAGTGGAATGCTTTGAATAATATGAAGTTTTCTTTATCGGAGCAAAAACTTCCAA GTAAAAATACTCAGAGGCCAGCTAAGAGGCAGCATCTAGCTGATGGTTTGAATGCTGCTAATAATGATGCATCAAGTGATAGTGATAAGGAGCAAAGTTT AACTGCTTATTATTCTAGTGCAATAACAATTGCAAATACACCAGAGGAAAAAAAGAGACGTGAAAGTCGATCTAAGCGATTTGAAAAAGGACAAGGACAT CGAGCTGAAATTAATTACCTCAAACAAAAAAATGCTGGTGCTGGAAACTTGTACAGTAGGCGGGCTAGCGCGTTGATGCTTAACAAAAGTTTTGATGACA GTGGAAGCAAAGCCGTTGAAGACATTGATTGGGATGCACTAACTGTCAAGGGTACCTGCCAGGAAATTGAGAAACGTTATTTGCGCCTAACTTCTGCACC TGATCCTTCCACTGTGAGACCAGAAGAAGTGCTAGAAAAAGCTCTGCTTATGGTTCAGAATTCTCAGAAGAACTACCTGTATAAATGCGATCAGTTGAAG TCTATTCGTCAAGATCTAACTGTTCAACGAATACAGAATCAGCTAACAGTTAAGGTGTATGAAACACATGCTCGATTATCACTGGAAGCAGGGGACTTGC CTGAGTATAATCAGTGTCAATCGCAGTTGAAAACCCTCTATGCTGAAGGAATTGAAGGATGTCATATGGAGTTTGCAGCTTACAACTTACTATGTGTTAT ATTGCACTCAAATAACCACAGAGATCTTGTATCATCGATGTCAAGATTAACTGAGGGGGCGAAGAAGGATAAAGCTGTTAAACATGCTCTTGCTGTTCGT GCAGCTGTCACTTCGGGAAACTATGTTATGTTTTTCAGACTTTACAAGGAGGCTCCTAACTTGAACACCTGCCTTATGGATCTCTATGTTGAAAAGATGC GTTACAAGGCTGTGAGTTGCATGTCCCGGTCATATCGCCCTACAATACCTATTTCTTACATTGCACAGGTTTTGGGCTTCTCCAGAACAAGTGATGGAAA TGATGAGAAGGACTCGGATGGGTCAGGATTAGTGGAGTGTGTGGAATGGATGAATACACATGGTGCTTGCCTTACCACAGATAACAGTGGAGAGATTCAG CTTGATACAAAGGCTTCATCCTCCAGTCTATACATGCCGGAACCTGAAGATGCTGTGGCCCATGGAGATTCTAATCTGGCTGTCAATGATTTTCTGACAC GGACATCCTTGTAG
AA sequence Show only first row Show all	>Potri.008G047700.5 pacid=42808548 polypeptide=Potri.008G047700.5.p locus=Potri.008G047700 ID=Potri.008G047700.5.v4.1 annot-version=v4.1 MLMMNQGVNTQTIASVDPNSLEGRYVVDVSQGQTSSYNPTAYESEAAPWTMHRVDNHSTENGILSNSSYHHDHRTQQLARSAQDSLNTASLASSSTQGTM SVTQDHSSYAAYNPTDPYGYGSSGYSSYYNNGYQQQPNHAYSQQQPSHSYSQQQPSHSYSQQQPSHSYSQQQPSHSYSSTGGAYQNTGAPYQPLSSFQNT GSYTGTTSYSTTYYNPGDYQTAGGYPSSGYSNQTSLWNDPNNANYTSQQYSTYAPDTTSAYSSGTAASTSMNYEQHYKQWADYYSQTEVSCAPGTEHLSA ASTSNLGSAVSGVYPTSNTQPPASFTPASWRPESASSELPSLQTGATISSTHDGWKQGTPSFQNHHASPTQPHFQISHESKASYDNIQEQQQTAPQAPNS QFPAAHQATQSYQSTLQNALSLDTRRVSRMQIPTNPRIASNLALGLSKTDKDGPTNSAAAKPAYISVSMPKPNDKVLSNDATNSMLKPGMFPNSLRCYVE RAFNLCKDDTQRVACQAIMKEIITKATADGTLNTRDWDAEPLFAIPNAEAVNMDSQCPTPVSSLPRYKRSPGRRSKSRWEPLPEEKSVDKPVSISNDIVK YDGWERKPPSVNSESKWNALNNMKFSLSEQKLPSKNTQRPAKRQHLADGLNAANNDASSDSDKEQSLTAYYSSAITIANTPEEKKRRESRSKRFEKGQGH RAEINYLKQKNAGAGNLYSRRASALMLNKSFDDSGSKAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALLMVQNSQKNYLYKCDQLK SIRQDLTVQRIQNQLTVKVYETHARLSLEAGDLPEYNQCQSQLKTLYAEGIEGCHMEFAAYNLLCVILHSNNHRDLVSSMSRLTEGAKKDKAVKHALAVR AAVTSGNYVMFFRLYKEAPNLNTCLMDLYVEKMRYKAVSCMSRSYRPTIPISYIAQVLGFSRTSDGNDEKDSDGSGLVECVEWMNTHGACLTTDNSGEIQ LDTKASSSSLYMPEPEDAVAHGDSNLAVNDFLTRTSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	0	1
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	1.00	0.9097
AT1G31810		AFH14	Formin Homology 14 (.1)		Potri.003G103800 [exp]	2.82	0.8699
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	4.47	0.8687
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	5.00	0.8724
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	5.91	0.8706
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	6.92	0.8768
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	6.92	0.8726
AT1G72390			unknown protein		Potri.003G069200 [exp]	7.41	0.8682
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.009G155400 [exp]	7.87	0.8411
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121701 [exp]	8.06	0.8244

Compare expression of checked genes

Potri.008G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.