Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12345 143 / 2e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213600 [exp] 232 / 3e-78 AT3G12345 144 / 8e-44 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040344 [exp] 164 / 5e-51 AT3G12345 167 / 9e-53 unknown protein Lus10023468 [exp] 99 / 5e-27 AT3G12345 101 / 1e-28 unknown protein Lus10023467 [exp] 48 / 3e-07 AT3G12345 51 / 1e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G047800.1 pacid=42805751 polypeptide=Potri.008G047800.1.p locus=Potri.008G047800 ID=Potri.008G047800.1.v4.1 annot-version=v4.1 ATGGCTGCGCTACCATCCTCTCCTTCTCTGCAACTCTCAACAACAACCATAACAGCAACCCATTTCCCTTATCCACGTGCCGCGTTCCCAATCAAACCTC ACGCGCCCAAACAATCCTCCATCACCCGCGCCACCACAGATGACAACAAAGCAGACACTACCCAAGAGCCCGAGTCGAAACCCGGATCCGCATCCGACGA CCAATTTGAGAGCCGCCTGTCCCAGGTCCGACTCCGATACAGAAGCGGGACCGGCAAGAAAGCAGAGCTCCGGAAAGCAAAGAAAGGGAAATCTGGGTCC GGGTCAGGATCGGGAATGTACCTGCCTCCAGTTCCTTTAAAGAAATCGGTTTCTGATGGGTTAAAAGTGGAATTCGGGTTTAGCCCGTACAGTGAAAGGG TAAACGGGCGGATCGCAATTCTTGGGCTATCAGCTTTGTTATTAGTAGAGCTTGCAGCGGGTAAAAGTGTAATTAATTATCACACTCCAGCAATTGTGGT GATTCAGATTTATTTTGTAGCTGCGGTGACTGCTTTGTATGTTAAGTACGAGAAAGAGAAGGTTAGCATCTGGCCTGAGTCTGCTCCTAGTGAGGAATGA
AA sequence Show only first row Show all	>Potri.008G047800.1 pacid=42805751 polypeptide=Potri.008G047800.1.p locus=Potri.008G047800 ID=Potri.008G047800.1.v4.1 annot-version=v4.1 MAALPSSPSLQLSTTTITATHFPYPRAAFPIKPHAPKQSSITRATTDDNKADTTQEPESKPGSASDDQFESRLSQVRLRYRSGTGKKAELRKAKKGKSGS GSGSGMYLPPVPLKKSVSDGLKVEFGFSPYSERVNGRIAILGLSALLLVELAAGKSVINYHTPAIVVIQIYFVAAVTALYVKYEKEKVSIWPESAPSEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12345			unknown protein		Potri.008G047800 [exp]	0	1
AT1G54500			Rubredoxin-like superfamily pr...		Potri.013G035700 [exp]	1.00	0.9956
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.008G118700 [exp]	1.41	0.9887
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.010G052000 [exp]	3.00	0.9846	PSBY.2
AT4G16410			unknown protein		Potri.006G017500 [exp]	3.46	0.9836
AT3G15190			chloroplast 30S ribosomal prot...		Potri.001G396600 [exp]	4.47	0.9842
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	4.69	0.9774	Pt-RPL21.3
AT1G51400			Photosystem II 5 kD protein (....		Potri.001G256900 [exp]	5.29	0.9732
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.008G151600 [exp]	5.65	0.9843	PSAD1.2
AT3G61870			unknown protein		Potri.014G102400 [exp]	7.00	0.9831
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.005G052000 [exp]	9.64	0.9662

Compare expression of checked genes

Potri.008G047800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.