Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28060 652 / 0 Pre-mRNA-splicing factor 3 (.1) AT3G55930 295 / 3e-91 Pre-mRNA-splicing factor 3 (.1) AT3G56790 64 / 4e-11 RNA splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213300 [exp] 1085 / 0 AT1G28060 653 / 0.0 Pre-mRNA-splicing factor 3 (.1) Potri.008G016200 [exp] 140 / 2e-38 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040340 [exp] 811 / 0 AT1G28060 751 / 0.0 Pre-mRNA-splicing factor 3 (.1) Lus10023464 [exp] 803 / 0 AT1G28060 743 / 0.0 Pre-mRNA-splicing factor 3 (.1) Lus10031931 [exp] 89 / 2e-19 AT3G55930 71 / 5e-14 Pre-mRNA-splicing factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0622 [poplar] [flax] Acylphosphatase PF06544 [poplar] [flax] DUF1115 Protein of unknown function (DUF1115) CL0622 [poplar] [flax] PF08572 [poplar] [flax] PRP3 pre-mRNA processing factor 3 (PRP3)
Representative CDS sequence Show only first row Show all	>Potri.008G048000.14 pacid=42806999 polypeptide=Potri.008G048000.14.p locus=Potri.008G048000 ID=Potri.008G048000.14.v4.1 annot-version=v4.1 ATGGACCGCTCCTTCAAACACACCCGTGACGACCGTGATCGTGACCACCACAAACACCGATCAAGAGACGATAAGCATCGAGACTCCTCCGATTCTCACC ACCACCGATCAGAGAGAGAATCTCACCAACGCGAGCATCACAAATCATCCAGGCGCGATGATACAAAGCGCGAAAGATCTCACGAACGAGAAGAGAGTGT GGATAGGCGAGAGAGATCTCACGATCACAAATCGTCTTCCTCATCGAGGCGTGAGGAGAGAGAGAGGTCGTATGATGCGAGAGAGGAGAGAGAAGGGAGT AGAGAGAGAAAACGCGAGAAGAGAGAAAGAGAAACTGTAGATGAAGATTATTTGGAGAGAAAGAAAAGAAAGGAGGGAGGAGGTAGTGAGGATAGAGCTG TTGTTGAGAAGGAGAAGAGGAGTAGAAGAAGATTTGGTGAAAAAGTGAAAGAAGAGGATAATAGGACTGACAACAATGATAATGGTAATAGTTTTGAGAA TGTGAAGAGAGTGGATTCGAGTGAGGCTGGACTGAAGGAGGAAGTCAATGATGAGCCAATTGGTGGCGGCAGGGGCAGCACCACAGAAAACGGTGGTGTT TCGACTACAAATGGTGCTTCTCTGGAATCATTCACTAAGACTCCAAGCAATCAGCCTGAGACCTCTGTGGCACCTGTTCACCCCCTTCCTACCAAGGTAT CTTCAATTTCAAACACAAATGAAAATAAGGGAGTTAGTATTGCCAGATCTCATGCGGTTCCTGGAAAATCTAGTACAGATGGGACATCTTCAGCTGCTGG GAAAAGTGGAAATCTATCACTTGATGCATTAGCAAAAGCTAAGAAAGCCTTGCAAATGCAGAAGGAACTGTCAGAGAAGCTGAAGAAGCTACCCCTGTCA AGCAAGGGTAATAACACAAGTTCAGGTGGTAGCTCACAAAGGGTATTGCCATCAGCAACCACTACTACTGCTGTTTCGACTGGGGCAGTTTCTAGTTCAT CCTCCTTATCTACAAGCACTATGGTGTCTATAAAGACACCTTCAACTGGTGTGGCACCTCTGCCCGATATTACTAGCATACCCAATTATGAAGCTGTTAA GCGTGCCCAGGAACTTGCTGCTAAAATGGGATTTCGCCAGGACCCTGAGTTTGCTCCTCTTATAAACTTGTTCCCTGGCCAGTTGCCAGCAGAAGTCTCT GTGCCACAGAAGCCTACTAAGACCCCTGTTCTTCGTGTGGATGCACTTGGTAGGGAAATAGATGAACGTGGAAATGTGGTGAATGTGACTAAACCAAGCA ACCTTAGCACCTTAAAGGTCAACATCAACAAGCAGAAAAAGGAAGCATTCCAGATTCTTAAACCTGAATTAGATGTGGATCCTGAATCGAACCCTTATTA TGATGTGAAAATGGGAATTAATAAGAATAAGTTCTTGAGACCCAAACGAATGACCTTCCAGTTTGTAGAGGAAGGCAAGTGGTTAAAAGAAGCTGAAATA ATGAAACTGAGGAATCAATTTGGAGAAGAAAGAGAGAAGGATATGAAGGCAAGGCAAGCATTACATGCAAAGGCGAAGGCAGCTCCGGATATAAATCCTA ATTTGATAGAGGTATCAGAGCGAGTTATAACCAAAGCGAAGCCTAAGGATCCGATTCCTGATGTAGAGTGGTGGGATGCACCTTTACTGACTGGTGGGAC TTATGGTGAAAATGATGATGTTCTTATCACTGAGCATAGATTGAAAAGGGATAAAATTACTATCTATGTGCAACACCCACGTCCTATTGAGCCCCCGGCT GAGCCAGCTCCTCCACCACCTCAACCTTTGAAACTAACTAAGAAGGAGCAGAAGAAGCTCAGAACACAGCGTCGACTTGCTCGGGAAAAGGATAGACAGG AAATGATTAGACAAGGCTTGATTGAACCTCCAAAACCAAAGGTTAAGATGAGCAATTTAATGAAAGTTCTTGGCTCAGAAGCAACACAAGACCCCACTAG ACTTGAAAAGCAAATTCGTACTGCAGCTGCTGAACGTGAACAAGCTCACATTGATCGAAATACTGCACGTAAGCTCACTCCTGCTGAGCGCCGTGAAAAG AAGGAGAGAAAGCTCTTTGATGACCCGAACACCATGGAAACTATTGTTTCTATTTACAGAATCAACAACCTCTCAGACAAGAAAACTCGCTTCAAAGTTG ATGTCAATGCTCACGAGAACCGCTTGACTGGATGCACGGTGATTACAGAGGGAATTTGTGTGTTGGTGGTTGAAGGGGGAAGCAAATCCATCAAAAGGTA TGGGAAGCTAATGCTTAGGCGTATAAACTGGGCTGAAGCTGTTAATGAGGATGAAGGAGATGACAATGAGGAGAAACCTGTGAACAAATGTATGCTGGTG TGGCAAGGTAGTGTTGCCAAACCTAGCTTCCACAGGTTTTCTTTACATGACTGTGTGACTGAAGCTGCAGCCCGAAAATATTTTGCTGATGCTGGTGTTG CCCACTATTGGGATCTTGCTGTCAATTTCTCTGATGATCAAATGTGA
AA sequence Show only first row Show all	>Potri.008G048000.14 pacid=42806999 polypeptide=Potri.008G048000.14.p locus=Potri.008G048000 ID=Potri.008G048000.14.v4.1 annot-version=v4.1 MDRSFKHTRDDRDRDHHKHRSRDDKHRDSSDSHHHRSERESHQREHHKSSRRDDTKRERSHEREESVDRRERSHDHKSSSSSRREERERSYDAREEREGS RERKREKRERETVDEDYLERKKRKEGGGSEDRAVVEKEKRSRRRFGEKVKEEDNRTDNNDNGNSFENVKRVDSSEAGLKEEVNDEPIGGGRGSTTENGGV STTNGASLESFTKTPSNQPETSVAPVHPLPTKVSSISNTNENKGVSIARSHAVPGKSSTDGTSSAAGKSGNLSLDALAKAKKALQMQKELSEKLKKLPLS SKGNNTSSGGSSQRVLPSATTTTAVSTGAVSSSSSLSTSTMVSIKTPSTGVAPLPDITSIPNYEAVKRAQELAAKMGFRQDPEFAPLINLFPGQLPAEVS VPQKPTKTPVLRVDALGREIDERGNVVNVTKPSNLSTLKVNINKQKKEAFQILKPELDVDPESNPYYDVKMGINKNKFLRPKRMTFQFVEEGKWLKEAEI MKLRNQFGEEREKDMKARQALHAKAKAAPDINPNLIEVSERVITKAKPKDPIPDVEWWDAPLLTGGTYGENDDVLITEHRLKRDKITIYVQHPRPIEPPA EPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKQIRTAAAEREQAHIDRNTARKLTPAERREK KERKLFDDPNTMETIVSIYRINNLSDKKTRFKVDVNAHENRLTGCTVITEGICVLVVEGGSKSIKRYGKLMLRRINWAEAVNEDEGDDNEEKPVNKCMLV WQGSVAKPSFHRFSLHDCVTEAAARKYFADAGVAHYWDLAVNFSDDQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.008G048000 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	2.44	0.8662
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	5.19	0.8452
AT2G39580			unknown protein		Potri.008G052500 [exp]	5.29	0.8372
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	6.63	0.8486
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	10.39	0.7890
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	12.12	0.8231
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	14.31	0.8314
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.016G128900 [exp]	14.83	0.8043
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	15.19	0.8002
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	21.35	0.8243

Compare expression of checked genes

Potri.008G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.