Plant FIBer expression Database

Potri.008G048100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13560 668 / 0 unknown protein
AT2G37370 519 / 1e-176 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G212900
[exp]
1088 / 0 AT5G13560 749 / 0.0 unknown protein
Potri.016G080900
[exp]
595 / 0 AT2G37370 676 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040337
[exp]
776 / 0 AT5G13560 791 / 0.0 unknown protein
Lus10023462
[exp]
775 / 0 AT5G13560 795 / 0.0 unknown protein
Lus10025285
[exp]
473 / 5e-159 AT2G37370 535 / 0.0 unknown protein
Lus10009063
[exp]
236 / 8e-70 AT2G37370 241 / 4e-72 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G048100.2 pacid=42806187 polypeptide=Potri.008G048100.2.p locus=Potri.008G048100 ID=Potri.008G048100.2.v4.1 annot-version=v4.1
ATGTCGTGGCTGAGATCTGCTGTGAGCAAGGCAGTGGAAGTAGGGAACAATAACAACCTGACCCGAGCAGTTAAAACCTACGCCGACTCTGTTGTTCACC
AAGCTGGTCAAGCCGTAGCTGAAGGAGCCAAAATATTGCAAGATCGTATTGGGAATAGGAATTATAAAAGTGCTAAGCAGACTGCCAAGAAATTAGAGGA
CGCTGCCGTCTCCTGTCGCGGCCTGGAGAGGGTTTTGTTGCTGAGAAGATGGGTGGTTGTGCTCAAACAATTCGAGAAGTTATCTGGAGGTTTTGCGGAA
GATAAACAGACACCCGTTGAGCAAAATGTTGGCCCTGATGTATCTTCGGGCAGTCCAAGAAAAACATCACTGCCCATGGTTCTGTATTATGATTCTGATG
TTGGGGGCGAACCAATGACTTTCCGTGATGTTTTTTTCCAAAGTCAGGCTCTAGAAGGCATATCAATGTCCATGATTCTTGAAGCACCAAATGAGGAAGA
AATTTCTTTGCTCCTGGAGGTGTTTAGGCTCTGTCTAACTGGAGGACAAGAAGTTCATAATGCAATCGTGAGCAGTATACAGGATCTGGCTTCTGCTTTT
GCAAGTTACCAAGATGAAGTGTTGGTGAAGCGCGAAGAATTGCTCCAATTTGCACAAGATGCAATTACAGGGTTGAAAATCAATACTGATCTTGCAAGAA
TAGATGCTGAAGCTAAGGTTCTGAAGAACAAACTCGATGGAAGTATGCATTCTGACAAGCCATCAATTGAAGATCAGGAAAAGGTGTCTGATGAAAAGGC
CAAAGCAACTATAAAGGCACTGAAAGAAGCTCTTGCACAAATTCGAATTTGTTCCAGATTGGAAGGGCTTCTGTTGAAAAAGAAAACTTTGAGCTTGGGA
GATTCGCCTGAGATTCATGCTCAAAAGGTTGACAAGTTGAAGGTCTTATCGGAATCTCTTGCTAGCTCTACATCAAAAGCTGAAAAACGTATCTTAGATC
ACAGATTGCAAAAAGAAGAGGCACTGAAAGTTCGTGTTGCCAAAGCTGATGAAGCAAATGAAAAGGAGAAGGAAATAGTAGCTGAGATATCAGTACTTGA
AAAACAAAGAGATGAACTTGAAGCTGAATTGAAAAAGGTTAATATCTCCTTAGCTGCTGCAAATGCGCGCCTTCGCAATGCCAGAGAAGAGAGGGATCAG
TTTGTTGAAGCTAACAGCCAGATTGTTGAGCATTTGAAAACAAAGGAAGATGAGGTGTCAAAATCAATTGCTGCATGCAAAGTAGAAGCAGATATTCTCA
CTACATGGCTCAATTTTCTGGAAGATACCTGGGTTCTCCAGCGATCTTACAGTGAAGCTAAGGAGAAGCAGGTCAATGATGAACTGGAGAGACACGAGGA
CTATTTTGTGAAGTTGGCTATTCATCTTCTCTCTGAATACAAGAAAGAGTTGGAGCCTTCTATCATCTGTATAGAGAAATTTGTGGAAAGCCTAAAGAAT
TTAAGTGGAGGGTTAGAGATAGCATCTAGTGTGGGGAATGAAGATTCTAAAGAATTAAACCCAAGGAAAAATCTTGAGAAGGAATTTTTGGATTGTGAAG
CAAAGATTATAACCACTTTCAGTGTGGTGGACAACATAAGAGAGCAGTTTTATGCTCAAAAAGGGGCAAGTTCTAGGAAAGATGATACCTCGGTTAAAGA
GCTATTTGATGATATTGAAAAGTTGAGAGTGGAATTCGAGTCAATTGAGAGACCAAATCTAGAACTGGAGGCTCCAACCCCTAAGGCTGATAATTCATCT
GAGAAGGCACTGGGAAGTCCATCTCATACCTCATCACAGAATGTGACTACCCTTAAATCCAATATAGATAATCATCCCACGGAACCTGCAGTGGAGGCAG
GTGAGGTGCTCGACCCTGCCGCAGAACTTGCAAAGTTAGAGTCAGAGTTTGGGAAAGATGCTCAAGACTACTCAACGGAGGAGATTGGTGACTGGGAGTT
TGATGAGCTTGAAAGGGAATTGAGATCCGGTGATACAGCAACAAAAAACTAG
AA sequence
>Potri.008G048100.2 pacid=42806187 polypeptide=Potri.008G048100.2.p locus=Potri.008G048100 ID=Potri.008G048100.2.v4.1 annot-version=v4.1
MSWLRSAVSKAVEVGNNNNLTRAVKTYADSVVHQAGQAVAEGAKILQDRIGNRNYKSAKQTAKKLEDAAVSCRGLERVLLLRRWVVVLKQFEKLSGGFAE
DKQTPVEQNVGPDVSSGSPRKTSLPMVLYYDSDVGGEPMTFRDVFFQSQALEGISMSMILEAPNEEEISLLLEVFRLCLTGGQEVHNAIVSSIQDLASAF
ASYQDEVLVKREELLQFAQDAITGLKINTDLARIDAEAKVLKNKLDGSMHSDKPSIEDQEKVSDEKAKATIKALKEALAQIRICSRLEGLLLKKKTLSLG
DSPEIHAQKVDKLKVLSESLASSTSKAEKRILDHRLQKEEALKVRVAKADEANEKEKEIVAEISVLEKQRDELEAELKKVNISLAAANARLRNAREERDQ
FVEANSQIVEHLKTKEDEVSKSIAACKVEADILTTWLNFLEDTWVLQRSYSEAKEKQVNDELERHEDYFVKLAIHLLSEYKKELEPSIICIEKFVESLKN
LSGGLEIASSVGNEDSKELNPRKNLEKEFLDCEAKIITTFSVVDNIREQFYAQKGASSRKDDTSVKELFDDIEKLRVEFESIERPNLELEAPTPKADNSS
EKALGSPSHTSSQNVTTLKSNIDNHPTEPAVEAGEVLDPAAELAKLESEFGKDAQDYSTEEIGDWEFDELERELRSGDTATKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13560 unknown protein Potri.008G048100
[exp]
0 1
AT3G26100 Regulator of chromosome conden... Potri.015G009400
[exp]
8.24 0.6004
AT2G38440 ITB1, DIS3, SCA... IRREGULAR TRICHOME BRANCH1, S... Potri.016G129000
[exp]
10.00 0.5090
AT5G13480 FY Transducin/WD40 repeat-like su... Potri.003G197900
[exp]
13.96 0.5274
AT4G35270 NLP2 Plant regulator RWP-RK family ... Potri.005G251700
[exp]
15.00 0.4915
AT5G24260 prolyl oligopeptidase family p... Potri.012G014900
[exp]
21.58 0.5528
AT1G53050 Protein kinase superfamily pro... Potri.001G399700
[exp]
32.40 0.5050
AT1G61690 phosphoinositide binding (.1) Potri.011G032200
[exp]
35.49 0.4761
AT3G03570 Protein of unknown function (D... Potri.013G073200
[exp]
36.22 0.4916
AT2G31945 unknown protein Potri.001G010600
[exp]
38.98 0.4554
AT4G04320 malonyl-CoA decarboxylase fami... Potri.004G005500
[exp]
43.62 0.4868

Potri.008G048100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.