Plant FIBer expression Database

Potri.008G048300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39370 176 / 1e-51 MAKR4 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
AT2G37380 89 / 9e-20 MAKR3 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G212800
[exp]
491 / 3e-173 AT2G39370 176 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Potri.016G080800
[exp]
239 / 2e-75 AT2G39370 157 / 9e-45 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Potri.006G214700
[exp]
204 / 4e-62 AT2G39370 116 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040336
[exp]
204 / 4e-62 AT2G39370 174 / 8e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10003309
[exp]
179 / 8e-53 AT2G39370 175 / 2e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10030311
[exp]
176 / 3e-51 AT2G39370 181 / 4e-54 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10023461
[exp]
172 / 3e-50 AT2G39370 177 / 4e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Lus10025286
[exp]
52 / 3e-07 AT2G37380 88 / 2e-19 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
Lus10024441
[exp]
45 / 0.0001 AT2G37380 87 / 8e-19 MEMBRANE-ASSOCIATED KINASE REGULATOR 3, unknown protein
PFAM info
Representative CDS sequence
>Potri.008G048300.1 pacid=42807663 polypeptide=Potri.008G048300.1.p locus=Potri.008G048300 ID=Potri.008G048300.1.v4.1 annot-version=v4.1
ATGGTGCACTTCCCTTCATTCCCACCTCACCAAACTCAGCTCCCACTTGTCACTCCACAGGCACAAACATACAACCCGGAGAGAGAGAGAGTTGCCTTGA
AATACTGTGAGTTGCTAGAAATGGCCATGAACCACCTCTTATCATATGACCACGATGATGATGACTACATTGACATGGAAGTCAGCTCATACTCCACCTT
CTTCTGCCAATCTAGAGGCTCGCCTCCATTCCCAAAAGAGTTCGAGTTCCAAAAGTCCACAGCTTCACTAGAAAAAGACACCACAACTTCCCCAGCTGAC
GAGCTCTTCTACAAAGGCAAGCTCCTTCCCCTTCACCTTCCTCCACGTTTACGAATGGTAGAGAAAATGCTAGAAAACTCTAACTCTTCATATGATCATA
GAAAAGACACATTTGAAGAATTCTTCAGCACCCCGCTAATGACAACTGCCCCTACACCGACTTCGACCAGCACTCCATTTGAATCCTGCAATATTTCACC
TGTCGAGTCTTGTTATGTCAGTAGAGAACTAAATCCAGAAGAGTATCTCTTTGAATATTCAAGTGAAACTGGTGGTTTTATCGATGAAAACCCAAAACCG
TCTAGGACCAAAAAGCTTAATCTGATCAAACAGTCCTCACTTGGCTCAAAACTTAAGGCTTCCCGGGCTTACCTCAAGTCTTTGTTCGGTAAGTCTGGTT
GCTCAGATGATTCTTGTACAGTGGCTTCAAAAGTTGCAGATGAAGTAACAGTTTCAAAAGCCAAAGAGACTTCGAACAAATATGTGAAGCCAGCAAAGAA
GACGCCTTGTGGGCAAATCCAGAAGGATAAATACCAAACTTCAACTACTGCATTGCAGAACAAACAAAGGATCAGCGAGGACGGTAGTGGTCGCCTCCAC
AGGAGATCATTCTCAATGTCCATCAAACGGTATTCAACAAAGAAGTCTTCATCATCATCTGACTCGTCATCATCTTCAAGCTCGACTAGTTCAAATGGGT
TTCATCGGCTGCCATTTCTAAAGAGAAGCAGCAGTGCAAAATCCGAGATAGAGAATCCAATCCAGGGAGCAATTGCACATTGCAAACAGTCCCAGCAGCT
GTTCCATTCGAGGAAGACTGTAAATGAAGCCAAGTTATACTCATTATCAGCTTCCAGAATTTCCATATGTGATGAACAAGAAAGGCCAGTTCTTTGCAGA
GGCTGA
AA sequence
>Potri.008G048300.1 pacid=42807663 polypeptide=Potri.008G048300.1.p locus=Potri.008G048300 ID=Potri.008G048300.1.v4.1 annot-version=v4.1
MVHFPSFPPHQTQLPLVTPQAQTYNPERERVALKYCELLEMAMNHLLSYDHDDDDYIDMEVSSYSTFFCQSRGSPPFPKEFEFQKSTASLEKDTTTSPAD
ELFYKGKLLPLHLPPRLRMVEKMLENSNSSYDHRKDTFEEFFSTPLMTTAPTPTSTSTPFESCNISPVESCYVSRELNPEEYLFEYSSETGGFIDENPKP
SRTKKLNLIKQSSLGSKLKASRAYLKSLFGKSGCSDDSCTVASKVADEVTVSKAKETSNKYVKPAKKTPCGQIQKDKYQTSTTALQNKQRISEDGSGRLH
RRSFSMSIKRYSTKKSSSSSDSSSSSSSTSSNGFHRLPFLKRSSSAKSEIENPIQGAIAHCKQSQQLFHSRKTVNEAKLYSLSASRISICDEQERPVLCR
G

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39370 MAKR4 MEMBRANE-ASSOCIATED KINASE REG... Potri.008G048300
[exp]
0 1
AT1G22430 GroES-like zinc-binding dehydr... Potri.019G041500
[exp]
4.00 0.9617
Potri.006G077775
[exp]
7.74 0.9224
AT4G27290 S-locus lectin protein kinase ... Potri.011G125601
[exp]
8.48 0.9330
AT5G17430 AP2_ERF BBM BABY BOOM, Integrase-type DNA-... Potri.010G181000
[exp]
9.16 0.9418
AT4G22810 AT-hook Predicted AT-hook DNA-binding ... Potri.001G115200
[exp]
9.16 0.9373
AT3G22600 Bifunctional inhibitor/lipid-t... Potri.002G050300
[exp]
11.40 0.9327
AT5G24860 ATFPF1, FPF1 ARABIDOPSIS FLOWERING PROMOTIN... Potri.010G024500
[exp]
12.32 0.9182
AT3G07870 F-box and associated interacti... Potri.008G215800
[exp]
12.40 0.9231
AT1G75130 CYP721A1 "cytochrome P450, family 721, ... Potri.014G043000
[exp]
16.91 0.9123
AT2G23450 Protein kinase superfamily pro... Potri.014G038600
[exp]
18.13 0.8992

Potri.008G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.