Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12360 862 / 0 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 746 / 0 Ankyrin repeat family protein (.1) AT2G31820 343 / 7e-110 Ankyrin repeat family protein (.1) AT1G05640 332 / 1e-105 Ankyrin repeat family protein (.1) AT5G60070 327 / 4e-105 ankyrin repeat family protein (.1) AT1G07710 325 / 3e-104 Ankyrin repeat family protein (.1) AT2G01680 320 / 1e-102 Ankyrin repeat family protein (.1) AT5G02620 314 / 3e-100 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 103 / 4e-23 Ankyrin repeat family protein (.1) AT1G10340 100 / 4e-22 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212700 [exp] 980 / 0 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 764 / 0 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 350 / 6e-114 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 347 / 1e-112 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 344 / 8e-112 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 344 / 1e-110 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 340 / 2e-108 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 333 / 1e-107 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 332 / 9e-107 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003308 [exp] 935 / 0 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 853 / 0 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10040335 [exp] 791 / 0 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 740 / 0 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 724 / 0 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 345 / 1e-111 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 343 / 4e-111 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 335 / 5e-108 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 332 / 1e-106 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 333 / 3e-106 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.008G048400.1 pacid=42806867 polypeptide=Potri.008G048400.1.p locus=Potri.008G048400 ID=Potri.008G048400.1.v4.1 annot-version=v4.1 ATGGCTTCACCTATGGAAGAAGGGTCGGAGAGGGATTTAGAGAAGGGATTAGTGCAGCCACAACTAAACCAAAACCCTCTCACCGACCCATCACCGACAC CATCACCATCTTCAACATCAACTGCCCCAGCTTTAGTTTTGTCGAATTCTGGCAAACGAATCGATCAAGCAGGAAAGAAGAAGTATGTAAAACAAGTCAC TGGTCGCCACAACGATACTGAGCTCCATCTGGCGGCTCAGCGTGGCAATTTGGCTGATGTGCAGCATATACTTAATGATATTAATTCACAAATGGTGGGG ACTTTGAGTGGAGCTGATTTTGATACTGAGGTTGCAGAGATAAGGGCATCGGTGGTTAATGAGGTGAATGAGTTAGGGGAGACCGCGCTGTTTACTGCCG CAGATAAAGGGCATCTTGAGGTGGTTAAGGAGTTACTGAAATATTCGAATAAGGAGTGCCTCACGAGGAAGAACAGGTCCGGGTATGATCCGTTGCATAT TGCTGCCGTCCAAGGGCACCATGCCATTGTCCAAGTGCTACTAGATCACGACCCCAGTCTGAGCCAAACACATGGCCCATCAAATGCAACTCCTCTTGTA TCTGCCGCAACAAGAGGGCATACTGCAGTAGTCATCGAATTGCTGTCAAAGGATGGTAGCTTATTGGAGATTTCTAGATCTAATGGGAAAAATGCCTTGC ATTTAGCTGCCCGACAAGGACATGTAGATATTGTAAAAGCATTGCTTAGCAAAGATCCCCAGTTAGCACGAAGGACTGACAAGAAGGGGCAGACTGCTTT GCATATGGCTGTAAAAGGGCAGAGCTGTGAGGTGGTGAAATTGCTTCTCGACGCAGATGCTGCGATCGTGATGCTTCCGGACAAGTTTGGCAATACAGCA TTACATGTAGCAACTAGGAAAAAGAGAGCAGAGATAGTGAATGAGTTGTTATTACTTCCTGACACCAACGTCAATGCTCTGACCAGAGACCACAAAACAG CGCTTGATATAGCAGAAGAGCTTGTCCTTTCTGAAGAATCATCAGATATAAAGGAGTGTCTTTATCGCTATGGTGCTCTTAGAGCTAATGAACTCAACCA ACCAAGGGATGAGTTGAGGAAAACTGTCACTCAAATTAAGAATGATGTTCACACCCAGCTGGAACAAACCAGAAGGACCAACAAGAATGTGCATAATATT TCAAAAGAGCTTAGAAAATTACACCGTGAAGGGATCAACAATGCCACCAACTCTGTAACTGTGGTCGCTGTGCTATTTGCAACCGTTGCTTTTGCAGCTA TCTTCACTGTACCTGGTGGTGATTTAAATAGTGGGATGGCTGTGGTGGTGAGCCATACTTCTTTCAAAATTTTCTTCATCTTTAATGCTATTGCTCTCTT TACATCCTTGGCTGTTGTGGTGGTTCAAATTACTTTGGTCAGAGGTGAGACAAAAGCTGAGAGGCGGGTAGTGGAAGTGATTAACAAATTGATGTGGTTG GCTTCCGTGTGCACATCAGTGGCTTTTATGGCCTCCGCTTACATAGTGGTTGGCCGTACACATGAATGGGCTGCAGTGTTAATTACAATTGTTGGCGGTG TTATAATGACTGCAGTTCTTGGAACCATGACTTATTATGTGGTGAAGTCGAAGAGGATTCGCTCAATGAGGAAAAGGGATAAGCATTCAAGGAGAAGTGG ATCGAATTCTGGGCACCATAACTCGGAGTTTTCCAATTCAGAAGTTGACCGAATTTACGCCCTTTAA
AA sequence Show only first row Show all	>Potri.008G048400.1 pacid=42806867 polypeptide=Potri.008G048400.1.p locus=Potri.008G048400 ID=Potri.008G048400.1.v4.1 annot-version=v4.1 MASPMEEGSERDLEKGLVQPQLNQNPLTDPSPTPSPSSTSTAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGNLADVQHILNDINSQMVG TLSGADFDTEVAEIRASVVNEVNELGETALFTAADKGHLEVVKELLKYSNKECLTRKNRSGYDPLHIAAVQGHHAIVQVLLDHDPSLSQTHGPSNATPLV SAATRGHTAVVIELLSKDGSLLEISRSNGKNALHLAARQGHVDIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLDADAAIVMLPDKFGNTA LHVATRKKRAEIVNELLLLPDTNVNALTRDHKTALDIAEELVLSEESSDIKECLYRYGALRANELNQPRDELRKTVTQIKNDVHTQLEQTRRTNKNVHNI SKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDLNSGMAVVVSHTSFKIFFIFNAIALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWL ASVCTSVAFMASAYIVVGRTHEWAAVLITIVGGVIMTAVLGTMTYYVVKSKRIRSMRKRDKHSRRSGSNSGHHNSEFSNSEVDRIYAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.008G048400 [exp]	0	1
AT1G19270		DA1	DA1 (.1)		Potri.014G039900 [exp]	3.16	0.8193
AT2G36430			Plant protein of unknown funct...		Potri.007G013800 [exp]	5.91	0.7886
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.006G198600 [exp]	7.48	0.7770
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	7.74	0.8041
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.002G133632 [exp]	8.94	0.7606
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.014G025700 [exp]	12.48	0.7954	NAC146
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	16.61	0.8018
AT1G26580			unknown protein		Potri.004G118400 [exp]	17.74	0.7566
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.012G022000 [exp]	21.63	0.7698
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.009G144300 [exp]	33.49	0.7422

Compare expression of checked genes

Potri.008G048400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.