Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 338 / 8e-114 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 289 / 1e-94 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 288 / 4e-94 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT1G01120 249 / 2e-78 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G19440 243 / 3e-76 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 241 / 9e-76 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT4G34510 240 / 1e-75 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G46720 239 / 3e-75 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G68530 239 / 5e-75 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 237 / 3e-74 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212600 [exp] 472 / 1e-166 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 385 / 2e-132 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 369 / 5e-126 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 355 / 3e-121 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 352 / 2e-119 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 303 / 2e-100 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 301 / 1e-99 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.008G120300 [exp] 248 / 2e-78 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.010G125300 [exp] 245 / 2e-77 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023458 [exp] 368 / 2e-125 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 367 / 3e-125 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040873 [exp] 297 / 1e-98 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10004918 [exp] 293 / 4e-97 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10005434 [exp] 293 / 5e-96 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 291 / 4e-95 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10002191 [exp] 263 / 2e-84 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 265 / 5e-84 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033627 [exp] 251 / 5e-81 AT5G04530 376 / 2e-128 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 253 / 2e-80 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Potri.008G048500.2 pacid=42807328 polypeptide=Potri.008G048500.2.p locus=Potri.008G048500 ID=Potri.008G048500.2.v4.1 annot-version=v4.1 ATGGATGGCCTCATCTTTGACACGCTCGACAAGCTATTTGCCAAAACAGGAATTTCTCCATCGGAAATTGACGTACTTGTTGTCAATGTTTCTTTGTTCT CTCCTGCACCTTCTCTGACAGCTCGAGTAGTTAATCGTTACAAGATGAGATCAAACGTTAAAACTTTCAACCTCTCCGGAATGGGCTGCAGTGCAAGCAT TGTAGCCATTGATCTGGTGCAACACTTGTTCAAGTCATACAAGAATGCCTTCGCTATTGTTGTGAGTACAGAATCATTAGGTTCAAATTGGTACCAAGGC AAAGAAAAATCCATGATGCTCTCAATCTGCCTCTTCCGTTCAGGAGGTTGCTCAATGCTATTCACAAACAACAGTGCTTTAAAACATCAAGCTATCTTCA GATTGAAACATGTCGTGCGTACGCATCTTGGCTCAAACGACGAGGCCTACGGATGCTGCATACAAGTAGCAGATGACCTTGGCTACAAAGGTTTTCTCCT TACTAGAAGCCTTAAAATATCTGCTGCTAAGGCTCTTGCTGCGAATCTTCGTGTCTTGTTACCTAAAATATTACCACTAAGTGAACAACTTCGCTATGTT TATGTATCTCGTCAACAGAACAAAACCAAAAGGAACAGTCTTCAAGAAATGGGAGCAGGCTTGAATCTGAAGACTGGAGTGGACCCTTTCTGTGTACACC CAGGTGGAAGGGCAATTATAGATGAGGTTGGGAAAAGTTTAAGCCTCAGTAATTATGATCTCGAGCCAGCTAGAATGGCACTTCATCGATTTGGCAATAC ATCAGCTGGTGGCCTTTGGTTTCAAGTGCAACAACTGTGTTTTCGAGGTAATGAGGGACCTGAAGGATGCCACTGTTTGGAAAGACAGCATAGAGCCATA GACCAATACCCTCCAGAAACCAGTAAACCACTGTCAACCCATTCATTGAAAAGTATAGTTGGGTCAATGACGAATATCTCAGCTTTGTTAGATTTCAATA GATGCTAG
AA sequence Show only first row Show all	>Potri.008G048500.2 pacid=42807328 polypeptide=Potri.008G048500.2.p locus=Potri.008G048500 ID=Potri.008G048500.2.v4.1 annot-version=v4.1 MDGLIFDTLDKLFAKTGISPSEIDVLVVNVSLFSPAPSLTARVVNRYKMRSNVKTFNLSGMGCSASIVAIDLVQHLFKSYKNAFAIVVSTESLGSNWYQG KEKSMMLSICLFRSGGCSMLFTNNSALKHQAIFRLKHVVRTHLGSNDEAYGCCIQVADDLGYKGFLLTRSLKISAAKALAANLRVLLPKILPLSEQLRYV YVSRQQNKTKRNSLQEMGAGLNLKTGVDPFCVHPGGRAIIDEVGKSLSLSNYDLEPARMALHRFGNTSAGGLWFQVQQLCFRGNEGPEGCHCLERQHRAI DQYPPETSKPLSTHSLKSIVGSMTNISALLDFNRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.008G048500 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.007G144000 [exp]	1.00	0.9904
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.001G000500 [exp]	1.41	0.9339
					Potri.018G132951 [exp]	18.43	0.9091
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Potri.001G347200 [exp]	20.88	0.8699
					Potri.001G225804 [exp]	34.39	0.8436
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Potri.010G046600 [exp]	36.08	0.9051
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.008G089700 [exp]	40.81	0.9010
AT3G09870			SAUR-like auxin-responsive pro...		Potri.006G125100 [exp]	41.95	0.8985
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G040700 [exp]	46.79	0.8951
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.002G060900 [exp]	46.90	0.8951

Compare expression of checked genes

Potri.008G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.