Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55140 570 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G09540 481 / 1e-171 Pectin lyase-like superfamily protein (.1) AT1G30350 184 / 4e-55 Pectin lyase-like superfamily protein (.1) AT5G55720 181 / 4e-54 Pectin lyase-like superfamily protein (.1) AT3G54920 168 / 4e-48 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT1G11920 161 / 2e-46 Pectin lyase-like superfamily protein (.1) AT4G22090 158 / 3e-45 Pectin lyase-like superfamily protein (.1) AT5G04310 160 / 5e-45 Pectin lyase-like superfamily protein (.1) AT4G22080 156 / 2e-44 RHS14 root hair specific 14 (.1) AT3G27400 156 / 2e-44 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080600 [exp] 550 / 0 AT3G55140 554 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G214400 [exp] 549 / 0 AT3G55140 553 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008000 [exp] 171 / 3e-50 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.011G008100 [exp] 166 / 3e-48 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.004G007300 [exp] 160 / 4e-46 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G093400 [exp] 157 / 1e-44 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 154 / 1e-43 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G064700 [exp] 154 / 2e-43 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.001G339500 [exp] 152 / 7e-43 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030313 [exp] 560 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10003307 [exp] 551 / 0 AT3G55140 562 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10025290 [exp] 530 / 0 AT3G55140 536 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10024439 [exp] 520 / 0 AT3G55140 534 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011258 [exp] 167 / 3e-48 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 166 / 8e-48 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 162 / 1e-46 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 154 / 2e-43 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 155 / 3e-43 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10022310 [exp] 152 / 7e-43 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.008G048600.3 pacid=42807403 polypeptide=Potri.008G048600.3.p locus=Potri.008G048600 ID=Potri.008G048600.3.v4.1 annot-version=v4.1 ATGGCCACGCTGCCTTACGCTGACGTGGATTCCAGCTTGAGAGCCATGGCCGGTCGAGCAGAAGGGTTTGGCCGGTTCTCCATCGGTGGCCTCCACGATC CTCTCTACTCTGTCACCACCTTGGCTGATGATGGGCCAGGATCACTACGTGAGGGTTGCAGGAGACAAGAACCATTGTGGATTGTTTTCGAGGTTTCTGG TACAATTAATCTTGTGTCACAATTAAGCGTGTCATCTTATAAAACAATAGATGGCAGAGGTCAAAGAATTAAGGTTGCAGGAAAAGGATTAAGATTGAAA GAATGTGAACACGTAATTGTCTGTAACCTTGAATTTGAAGGTGGTAGAGGACATGATATTGATGGCATCCAAATAAAGCCTAATTCTAGACATATTTGGA TTGATCGATGTAGTCTTCGTGATTATGATGATGGTCTTATTGATATTACCAGACAAAGCACTGATATCACTGTTTCAAGGTGTTATTTTGCACAACATGA CAAGACAATGCTGATTGGAGCAGATGCATCTCATGTTGGTGATAGATGCATAAGAGTGACAATTCATCATTGTTTTTTTAATGGAACAAGGCAAAGACAT CCGCGTCTTAGATACGGGAAAGTTCATTTGTACAACAACTATACAAGGAATTGGGGAATTTATGCTGTTTGTGCAAGTGTAGAAGCCCAGATATATTCTC AATGCAATATATATGAAGCAGGACAGAAGAAAAAGACTTTTGAATTTTACACAGAAAAGGCAGCAGACAGACAAGGGGCTAGTTCTGGTTTAATAAGATC TGAAGGAGATGTATTGCTGAATGGAGCTCAATCATGCTTATTACAAGGTGTAGGAGAAAACTGTGTGTTCCATCCAGGTGAATATTATCCAACTTGGACC CTGGAGTCCCCCTTGGATTCTCTGAAAGATGTCCTCCAAATCTGCACTGGTTGGCAATCTATTCCTCGACCAGCAGGGATGTAG
AA sequence Show only first row Show all	>Potri.008G048600.3 pacid=42807403 polypeptide=Potri.008G048600.3.p locus=Potri.008G048600 ID=Potri.008G048600.3.v4.1 annot-version=v4.1 MATLPYADVDSSLRAMAGRAEGFGRFSIGGLHDPLYSVTTLADDGPGSLREGCRRQEPLWIVFEVSGTINLVSQLSVSSYKTIDGRGQRIKVAGKGLRLK ECEHVIVCNLEFEGGRGHDIDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADASHVGDRCIRVTIHHCFFNGTRQRH PRLRYGKVHLYNNYTRNWGIYAVCASVEAQIYSQCNIYEAGQKKKTFEFYTEKAADRQGASSGLIRSEGDVLLNGAQSCLLQGVGENCVFHPGEYYPTWT LESPLDSLKDVLQICTGWQSIPRPAGM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55140			Pectin lyase-like superfamily ...		Potri.008G048600 [exp]	0	1
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Potri.016G014900 [exp]	5.19	0.7889
AT5G35810			Ankyrin repeat family protein ...		Potri.004G003401 [exp]	15.19	0.8381
AT3G50120			Plant protein of unknown funct...		Potri.003G159400 [exp]	16.24	0.8292
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.004G057300 [exp]	16.97	0.7055
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	18.46	0.7868
AT1G79480			Carbohydrate-binding X8 domain...		Potri.008G082900 [exp]	18.60	0.8417
AT5G25570			unknown protein		Potri.006G245100 [exp]	19.18	0.7900
AT4G21960		PRXR1	Peroxidase superfamily protein...		Potri.004G015300 [exp]	19.23	0.7888	Pt-PRXR1.1
AT1G03730			unknown protein		Potri.013G130300 [exp]	24.73	0.7478
					Potri.006G225400 [exp]	29.74	0.8179

Compare expression of checked genes

Potri.008G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.