Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55200 2255 / 0 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 2255 / 0 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT4G21100 244 / 3e-66 DDB1B damaged DNA binding protein 1B (.1) AT4G05420 239 / 2e-64 DDB1A damaged DNA binding protein 1A (.1.2) AT3G11960 103 / 5e-22 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) AT5G51660 70 / 1e-11 CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212100 [exp] 2442 / 0 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.001G357900 [exp] 244 / 5e-66 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2) Potri.006G197200 [exp] 85 / 3e-16 AT3G11960 1679 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Potri.012G022700 [exp] 74 / 6e-13 AT5G51660 2117 / 0.0 cleavage and polyadenylation specificity factor 160 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023443 [exp] 2371 / 0 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10040321 [exp] 2248 / 0 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10033455 [exp] 197 / 2e-51 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10020922 [exp] 154 / 2e-37 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1) Lus10017295 [exp] 88 / 3e-17 AT3G11960 1633 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10013542 [exp] 83 / 1e-15 AT3G11960 1640 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10031692 [exp] 66 / 2e-10 AT5G51660 2142 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10031111 [exp] 64 / 9e-10 AT5G51660 2134 / 0.0 cleavage and polyadenylation specificity factor 160 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF03178 [poplar] [flax] CPSF_A CPSF A subunit region CL0186 [poplar] [flax] PF10433 [poplar] [flax] MMS1_N Mono-functional DNA-alkylating methyl methanesulfonate N-term
Representative CDS sequence Show only first row Show all	>Potri.008G048900.1 pacid=42808234 polypeptide=Potri.008G048900.1.p locus=Potri.008G048900 ID=Potri.008G048900.1.v4.1 annot-version=v4.1 ATGTACCTCTACAGCCTCACTCTCCAACGAGCTACCGGAATCGTTTCCGCCATAAACGGCAACTTCTCCGGCGGCAAAGCACAAGAAATCGTAGTCGCTC GCGGCAAAGTTCTCGATCTCCTCCGACCTGACGAGAACGGTAAGCTACAGACAGTTCTCTCTGTTGAAATATTCGGTGCTATTCGCTCATTAGCTCAGTT TAGACTAACTGGAGCTCAAAAAGATTATATTGTTGTTGGTTCTGATTCGGGCAGGATTGTAATTTTAGAATATAACAAGGAGAGAAATGTCTTTGACAAA ATTCATCAAGAAACTTTTGGAAAATCTGGCTGTCGCCGTATTGTTCCGGGTCAGTATTTGGCTGTGGATCCGAAAGGAAGGGCTGTTATGATTGGTGCCT GTGAGAAACAGAAGCTAGTTTATGTTTTGAATAGAGATACTGTTGCTAGGTTAACCATTTCTTCGCCTTTAGAGGCACATAAGTCGCATACTATATGTTA CTCAGTATGCGGTGTTGATTGTGGGTTTGATAATCCGATTTTTGCTGCGATTGAGTTGGATTATTCGGAAGCTGATCAGGACTCGACAGGGCAAGCTGCT GGTGAAGCGCAGAAGAATTTGACATTTTATGAGCTTGATCTGGGGCTTAATCATGTGTCTAGGAAATGGTCTGAGCAGGTTGATAACGGCGCTAATATGC TTGTTACAGTACCTGGAGGTGGTGATGGGCCAAGTGGAATTTTAGTTTGTGCGGAGAATTTCGTGATTTATAAGAATCAAGGGCATCCTGATGTGAGGGC TGTGATTCCTAGGCGTGCTGATTTGCCTGCTGAACGTGGGGTTTTGATAGTTTCTGCAGCAACACATAAGCAGAAATCGATGTTTTTCTTTCTGTTGCAG ACTGAGTACGGTGACATTTTTAAGGTTACATTGGATCATGAGAATGACAAGGTTAAGGAATTGAAGATTAAGTATTTTGACACGATCCCAGTTACTTCTT CGATATGTGTGTTGAAATCAGGGTTTTTGTTTGCTGCATCAGAGTTTGGGAATCATGCATTGTATCAGTTTCAGGCCATTGGGGAGGAAGAGGATGTGGA GGCCTCATCTGCTACTTTGATGGAAACTGAGGAAGGCTTCCAGCCTGTGTTTTTCCAGCCAAGAGGGTTAAAGAATCTTGTTAGGATTGACCAGGTTGAG AGCTTGATGCCTGTTATGGACATGAAGGTTGCTAATATTTTTGATGAAGAAACCCCTCAGATATTTTCACTTTGTGGGCGCGGTCCTCGCTCCTCATTGA GGATATTGAGGCCTGGTTTGGCTATTAGTGAGATGGCTGTGTCACAGCTTCCTGGTGTACCAAGTGCTGTTTGGACTGTGAAAAGGAATGCTAATGATGA GTTTGATGCATATATTGTTGTGTCCTTTAACAACGCAACTCTTGTGCTTTCAATTGGAGAAACAGTTGAGGAAGTTAGCGATAGTGGGTTTCTTGATACC ACACCTTCCCTTGCTGTTTCTTTAATTGGTGATGATTCTTTGATGCAAATTCACCCAAATGGCATAAGACATATTAGGGAAGATGGGCGTATTAATGAGT GGAGAACTCCTGGAAAGAGGACAATTGTGAAAGTTGGCTCAAATAGACTTCAAGTGGTTATTGCTTTAAGTGGAGGAGAGCTTATATATTTTGAGGTGGA TATGACCGGTCAGCTAATGGAGGTGGAGAAGCATGAGATGTCTGGAGATGTGGCCTGTTTGGACATTGCCCCTGTTCCAGAAGGAAGACAGAGGTCTCGA TTCCTAGCAGTTGGTTCGTATGATAACACCATCCGTGTCTTGTCTTTGGATCCTGATGACTGTATGCAGATTCTGAGTGTGCAAAGTGTTTCGGCGCCTC CAGAATCCCTCCTGTTTCTTGAGGTTCAGGCATCAATTGGTGGCGAAGATGGTGCTGATCACCCTGCCAGTCTTTTCCTCAATGCTGGTTTGCAGACTGG GGTTCTATTTAGGACAGTGGTGGATATGGTGACAGGCCAGCTTTCTGACTCCCGTTCCCGGTTTTTGGGTTTGAGGGCCCCAAAACTTTTTGCCATTAAT GTGAGAGGTCGACGTGCGATGCTGTGCTTATCTAGCCGACCCTGGCTTGGTTATATTCACCAAGGGCATTTTCTGTTAACACCCCTTTCATATGAAACTC TTGAATATGCTGCTTCATTCTCATCTGATCAGTGTGCAGAAGGTGTGGTTGCTGTCGCCGGGGATGCGTTGAGGATTTTTACAATTGAGAGATTGGGAGA AACATTCAATGAAACTGCAATACCTCTAAGATACACTCCAAGAAAGTTTGTGCTTCAACCTAAGCGGAAATTGTTGGTCATTATTGAGAGTGATCAAGGA GCGTATACAGCAGAGGAGCGTGAAGCAGCAAAAAAAGAGTGCTTCGAAGCTGCTGGAATGGGGGAAAATGGAAGTGCCAATGCTGAGAAGATGGAAAATG GTGATGATGATGATAAAGATGACCCCCTATCTGATGAGCAGTATGGTTATCCAAAGGCTGAGGCAGACAGGTGGGTTTCTTGCATTAGAGTACTTGACCC AAGGTCAGCTACTACTACTTGCTTGCTGGAACTTCAGGACAATGAAGCTGCTTTTAGCGTATGCACTGTAAATTTCCACGACAAGGAGCATGGAACTCTC TTAGCTGTTGGTACAGCCAAGGGACTGCAGTTTTGGCCCAAAAGAAGCTTAATTGCTGGGTTCATTCACATTTATAAATTTGTGGATGATGGTAAAAGCC TGGAACTCTTGCATAAGACACAAGTAGAAGGAGTTCCACTTGCTTTGTGTCAGTTTCAGGGAAGATTACTTGCGGGAATAGGATCAGTGCTGAGATTGTA TGACTTGGGGAAAAAAAGGTTGCTTAGAAAATGTGAGAATAAGCTGTTCCCCAACTCCATTGTCTCTATTCACACCTATCGTGATCGGATTTATGTGGGG GACATTCAAGAATCATTTCATTTCTGCAAGTACAGGCGGGATGAAAATCAGCTGTATATTTTTGCTGATGATAGTGTTCCAAGATGGCTTACAGCATCAT ACCACGTAGATTTTGATACCATGGCTGGTGCAGACAAGTTTGGGAATATCTACTTTGTGAGGTTGCCACAGGATGTTTCTGATGAGATAGAAGAAGATCC AACTGGCGGAAAGATAAAGTGGGAGCAGGGAAAGCTTAATGGAGCTCCAAACAAGGTAGAGGAGATAGTACAGTTTCATATTGGTGATGTGGTTAATTCC TTGCAGAAGGCATCTCTAATTCCAGGCGGTGGAGAATGCATCATGTATGGGACAGTGATGGGGAGTGTGGGGGCCCTACTTCCATTCACCTCTCGAGATG ATGTTGACTTCTTTTCACACTTGGAAATGCATTTGAGACAAGACCACCCACCTTTGTGTGGAAGAGATCATATGGCATATAGGTCTGCTTATTTTCCTGT TAAGGATGTGATCGATGGAGATCTATGTGAGCAGTTCCCGACTTTGCCACTTGATGCACAAAGAAAAATTGCAGATGAGCTGGACAGAACTCCTGGGGAG ATACTCAAGAAACTTGAAGAAGTTCGAAACAAGATCATCTGA
AA sequence Show only first row Show all	>Potri.008G048900.1 pacid=42808234 polypeptide=Potri.008G048900.1.p locus=Potri.008G048900 ID=Potri.008G048900.1.v4.1 annot-version=v4.1 MYLYSLTLQRATGIVSAINGNFSGGKAQEIVVARGKVLDLLRPDENGKLQTVLSVEIFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKERNVFDK IHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTICYSVCGVDCGFDNPIFAAIELDYSEADQDSTGQAA GEAQKNLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGILVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ TEYGDIFKVTLDHENDKVKELKIKYFDTIPVTSSICVLKSGFLFAASEFGNHALYQFQAIGEEEDVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQVE SLMPVMDMKVANIFDEETPQIFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKRNANDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDT TPSLAVSLIGDDSLMQIHPNGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR FLAVGSYDNTIRVLSLDPDDCMQILSVQSVSAPPESLLFLEVQASIGGEDGADHPASLFLNAGLQTGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFAIN VRGRRAMLCLSSRPWLGYIHQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRIFTIERLGETFNETAIPLRYTPRKFVLQPKRKLLVIIESDQG AYTAEEREAAKKECFEAAGMGENGSANAEKMENGDDDDKDDPLSDEQYGYPKAEADRWVSCIRVLDPRSATTTCLLELQDNEAAFSVCTVNFHDKEHGTL LAVGTAKGLQFWPKRSLIAGFIHIYKFVDDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGSVLRLYDLGKKRLLRKCENKLFPNSIVSIHTYRDRIYVG DIQESFHFCKYRRDENQLYIFADDSVPRWLTASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHIGDVVNS LQKASLIPGGGECIMYGTVMGSVGALLPFTSRDDVDFFSHLEMHLRQDHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDAQRKIADELDRTPGE ILKKLEEVRNKII

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	0	1
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	2.00	0.8203
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	6.48	0.8044	PURE.1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.013G081300 [exp]	6.92	0.7351
AT5G59980			Polymerase/histidinol phosphat...		Potri.009G025800 [exp]	12.08	0.8147
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	12.32	0.7747
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.012G108000 [exp]	14.73	0.7789
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	17.74	0.7397
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G046300 [exp]	17.74	0.7721
					Potri.013G037900 [exp]	18.97	0.7706
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	20.49	0.8027

Compare expression of checked genes

Potri.008G048900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.