Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39420 479 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 452 / 3e-161 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 451 / 1e-160 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 445 / 2e-158 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 393 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 360 / 2e-124 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 353 / 1e-121 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 268 / 4e-88 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G11090 254 / 3e-83 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 235 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212200 [exp] 579 / 0 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 344 / 3e-118 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 344 / 4e-118 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 283 / 9e-94 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G046500 [exp] 253 / 1e-82 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 244 / 2e-78 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 206 / 3e-64 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 204 / 9e-64 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 190 / 3e-58 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040328 [exp] 470 / 3e-168 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 461 / 4e-160 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 343 / 1e-117 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 263 / 7e-87 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10030366 [exp] 259 / 2e-85 AT3G62860 400 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 253 / 2e-82 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 249 / 2e-81 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 251 / 4e-81 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 249 / 4e-81 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10034331 [exp] 250 / 9e-81 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G049000.1 pacid=42806916 polypeptide=Potri.008G049000.1.p locus=Potri.008G049000 ID=Potri.008G049000.1.v4.1 annot-version=v4.1 ATGGCACGAGAGACTGGGAATGTCAGATATGATGAGGAGTTTGTGTCGAATTCTCGAGGAATGAAGCTTTTCACATGCAAATGGATTCCCATGAACCAAG AACCAAAAGCCTTGATCTTTATTTGCCATGGTTATGCCATGGAATGCAGCATCACCATGAATAGCACCGCTATTCGCCTTGCAAAGGCAGGTTTTGCAGT GTATGGTGTAGATTATGAAGGCCATGGAAAATCAGCCGGTTTACAAGGCTATGTAGAAAACATGGATCATGTCATCAATGATTGCTCAAGTCATTTTACA AGCATATGTGAGAAGCAAGAGAACAAGGGGAGGATGAGATATCTGTTAGGAGAATCCCTGGGTGGAGCAGTTGCTTTGCTCCTCCACAGAAAGAAGCCAG ATTTTTGGGACGGTGCAGTCTTGGTGGCACCCATGTGTAAGATTGCAGATGATGTGAGGCCACCTCAAATGGTAATTAGTATTTTAAGAAAGCTTTGCAG TGTCATTCCAACTTGGAAAATAATCCCAACTAAGGATATCGTGGATGCTGCCTTTAAACTACCTGAAGTAAGGCAGCAGATTAGAGAGAACCAATATTGC TACAACGGGAAACCTCGCTTGAATACCGGCCATGAACTTCTAAGAATTAGCTTGGATCTTGAGCAGAGGCTTGAAGAAGTGTCATTGCCATTTCTAGTTC TGCACGGTGAAGAAGATAAAGTGACAGATAAATCTGTAAGCGAGAAACTCTTCAGTGTGGCTTCAAGTTCAGACAAGACCATTAAGCTGTATCCTGAGAT GTGGCACGGTCTACTCTATGGAGAACCAGTAGAAAACCGCGACATTGTTTTTGGAGACATTATCGACTGGTTAGGGAACAGAACTCATCTTGGAAATACC AGATTGGAGATGGAGCAAAAACGTATGAATGATGCTCCTTCCAAGTCTAAATAA
AA sequence Show only first row Show all	>Potri.008G049000.1 pacid=42806916 polypeptide=Potri.008G049000.1.p locus=Potri.008G049000 ID=Potri.008G049000.1.v4.1 annot-version=v4.1 MARETGNVRYDEEFVSNSRGMKLFTCKWIPMNQEPKALIFICHGYAMECSITMNSTAIRLAKAGFAVYGVDYEGHGKSAGLQGYVENMDHVINDCSSHFT SICEKQENKGRMRYLLGESLGGAVALLLHRKKPDFWDGAVLVAPMCKIADDVRPPQMVISILRKLCSVIPTWKIIPTKDIVDAAFKLPEVRQQIRENQYC YNGKPRLNTGHELLRISLDLEQRLEEVSLPFLVLHGEEDKVTDKSVSEKLFSVASSSDKTIKLYPEMWHGLLYGEPVENRDIVFGDIIDWLGNRTHLGNT RLEMEQKRMNDAPSKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39420			alpha/beta-Hydrolases superfam...		Potri.008G049000 [exp]	0	1
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.013G026100 [exp]	9.79	0.7773	SAG13.4
AT4G35750			SEC14 cytosolic factor family ...		Potri.005G107300 [exp]	21.26	0.7688
AT1G47578			Biotin/lipoate A/B protein lig...		Potri.002G131000 [exp]	26.07	0.7090
AT1G74210		AtGDPD5	glycerophosphodiester phosphod...		Potri.015G058400 [exp]	43.26	0.6811
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Potri.009G005100 [exp]	44.00	0.7199
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.002G002700 [exp]	52.38	0.6739
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.004G168000 [exp]	58.96	0.6451
AT1G52190			Major facilitator superfamily ...		Potri.018G041800 [exp]	63.88	0.6809
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.016G006100 [exp]	75.00	0.6342
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.002G151700 [exp]	133.26	0.6636

Compare expression of checked genes

Potri.008G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.