Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75270 340 / 2e-120 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19570 320 / 2e-112 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT5G16710 297 / 1e-102 DHAR3 dehydroascorbate reductase 1 (.1) AT1G19550 188 / 2e-61 Glutathione S-transferase family protein (.1) AT5G02790 50 / 2e-07 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G42150 42 / 9e-05 Glutathione S-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125100 [exp] 291 / 3e-100 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.010G211600 [exp] 286 / 7e-100 AT1G75270 253 / 5e-87 dehydroascorbate reductase 2 (.1) Potri.004G080400 [exp] 56 / 1e-09 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G114000 [exp] 49 / 6e-07 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1) Potri.011G113125 [exp] 47 / 1e-06 AT1G78380 259 / 2e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113000 [exp] 47 / 2e-06 AT1G78380 259 / 3e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.004G080700 [exp] 46 / 4e-06 AT1G78380 217 / 6e-72 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113400 [exp] 43 / 4e-05 AT1G17170 231 / 6e-78 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) Potri.010G035500 [exp] 40 / 0.0004 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023441 [exp] 334 / 5e-118 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10040320 [exp] 331 / 1e-112 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10023442 [exp] 313 / 9e-110 AT1G75270 317 / 5e-111 dehydroascorbate reductase 2 (.1) Lus10009135 [exp] 294 / 5e-100 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10028510 [exp] 280 / 2e-93 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10019895 [exp] 59 / 3e-10 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10030020 [exp] 48 / 1e-06 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10007897 [exp] 45 / 9e-06 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10020519 [exp] 45 / 1e-05 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005367 [exp] 45 / 1e-05 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G049300.2 pacid=42806565 polypeptide=Potri.008G049300.2.p locus=Potri.008G049300 ID=Potri.008G049300.2.v4.1 annot-version=v4.1 ATGGCTTTAGAGATCTGTGTCAAAGCTGCTGTTGGTGCCCCTAATATTCTCGGAGATTGCCCATTTTGCCAGAGAGTTCTGTTGAGTCTGGAAGAGAAGA AAATTCCATACAAGTCTCATCTCATCAATCTGGGTGATAAACCTCAGTGGTTTTTGGAGATAAGCCCGGAAGGAAAGGTCCCAGTGGTGAAAATTGATGA CAAATGGGTCGCAGATTCTGACGTGATTGTTGGTATCTTAGAGGAGAAAAACCCTGAACCCCCTCTTGCCACTCCTCCGGAATTTGCCTCTGTGGGTTCG AAGATATTCCCATCTTTTGTTAAGTTCTTGAAGAGCAAGGATCCCAATGATGGAACTGAGCAGGCTTTGCTTGAGGAATTGAAGGCATTGGATGGGCATC TCAAGGGTCCTTTCATTGCTGGGGAAAAGATCACAGCAGTGGATTTGAGCTTGGCTCCGAAGCTTTACCATCTTGAGGTTGCTCTTGGCCATTTCAAGAA CTGGACTATCCCTGACAATTTGACACATGTCCTCAACTACATTAAGTTGTTGTTCTCCCGTGAATCTTTCAAGAAGACAAGAGCTGCCGAGGAACATGTC ATTGCTGGATGGGAGCCAAAGGTCAACGCATGA
AA sequence Show only first row Show all	>Potri.008G049300.2 pacid=42806565 polypeptide=Potri.008G049300.2.p locus=Potri.008G049300 ID=Potri.008G049300.2.v4.1 annot-version=v4.1 MALEICVKAAVGAPNILGDCPFCQRVLLSLEEKKIPYKSHLINLGDKPQWFLEISPEGKVPVVKIDDKWVADSDVIVGILEEKNPEPPLATPPEFASVGS KIFPSFVKFLKSKDPNDGTEQALLEELKALDGHLKGPFIAGEKITAVDLSLAPKLYHLEVALGHFKNWTIPDNLTHVLNYIKLLFSRESFKKTRAAEEHV IAGWEPKVNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.008G049300 [exp]	0	1
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Potri.010G255200 [exp]	3.74	0.7404
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	5.29	0.7364	CCRL2,CCR.9
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.009G121200 [exp]	6.92	0.7122
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.002G151700 [exp]	10.58	0.7158
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Potri.001G391400 [exp]	12.48	0.7220	Pt-IE.1
AT5G28060			Ribosomal protein S24e family ...		Potri.005G049400 [exp]	18.57	0.7150	Pt-RPS24.1
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026500 [exp]	31.74	0.6964	Pt-AG12.2
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	33.49	0.6725
					Potri.017G119700 [exp]	50.37	0.6652
AT1G14980		CPN10	chaperonin 10 (.1)		Potri.009G068900 [exp]	50.94	0.6662	CPN10.2

Compare expression of checked genes

Potri.008G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.