Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MKP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55270 711 / 0 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT3G23610 100 / 5e-24 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 100 / 6e-24 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT5G23720 86 / 4e-17 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT2G04550 67 / 4e-12 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G01510 48 / 3e-05 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210900 [exp] 1310 / 0 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G033000 [exp] 94 / 9e-22 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 89 / 6e-18 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 87 / 3e-17 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 66 / 2e-11 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.006G040300 [exp] 58 / 1e-08 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 57 / 2e-08 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.001G349000 [exp] 45 / 0.0002 AT3G01510 775 / 0.0 like SEX4 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003291 [exp] 796 / 0 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10030324 [exp] 790 / 0 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10006229 [exp] 528 / 6e-177 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 527 / 2e-176 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10021940 [exp] 98 / 3e-23 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 86 / 8e-19 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 83 / 1e-18 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 89 / 9e-18 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 87 / 4e-17 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10000921 [exp] 71 / 6e-13 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.008G049900.1 pacid=42807081 polypeptide=Potri.008G049900.1.p locus=Potri.008G049900 ID=Potri.008G049900.1.v4.1 annot-version=v4.1 ATGGTGGGCAAAGAAGATGCCTCTAATAATCCTCTGGCTCCGTGCCAGCTTCCTTCTGCCGGCGGGTCTCGCAAAGTCTTCTGGCGTTCTGCGTCCTGGT CCTCTTCTAGGACTGCTCTACAGCACCCTGGAACAGAAGAGAAAGATTGCGTTATAGATCCGAATGGGAATCCTGCTGGTAATAATAGTGGTAATGGGCA AAACAGGAGGTATCCTGCTCCTTTAACTCCGCGGTCTCAACAGAATTGTAAAGCACGGTCGTGCTTGCCACCTTTGTCGATTGCTCGGAGAAGTCTAGAC GAGTGGCCAAAAGCAGGTTCTGATGATTCGGGAGAGTGGCCGCAGCCTCCTACTCCGAGTGGGAACAAGAGCGGTGAAAGGTTGAAACTTGATTTATCTT CGATTCAAAGGACCCCTGATAGGAACGGTGGGTTGGTGAAGAAGGATAGGATTGCTTTCTTTGATAAGGAATGCTCTAAAGTTGCTGAACACGTGTATCT AGGCGGGGATGCTGTTGCTAGAGATAGGGAGATTTTGAAGCAGAATGGGATTACCCATGTGTTAAATTGTGTGGGTTTTGTTTGTCCGGAGTATTTCAAG GCAGATTTTGTGTATAGGACTTTGTGGTTGCAGGATAGTCCATCAGAGGATATAACGAGTATTCTATATGATGTTTTCGATTATTTTGAAGATGTTAGGG AACAGGGCGGGAGGGTTTTTGTTCATTGCTGCCAAGGGGTTTCACGGTCCACTTCATTGGTGATAGCATATCTCATGTGGAGAGAGGGCCAGAGTTTTGA TGACGCGTTTCAGTATGTGAAGGCAGCAAGAGGGATTGCAGATCCCAACATGGGTTTTGCCTGCCAGTTATTACAGTGCCAAAAGAGGGTTCATGCCTTC CCTCTTAGCCCTAGTTCATTGTTGAGGATGTATAGAATTGCCCCACACTCACCCTATGACCCTTTGCATCTTGTCCCAAGGATGCTGAATGACCCTTCGC CATCTGCTCTGGATTCTAGAGGTGCCTTTATTGTTCACATACCTTCTTCAATTTATGTCTGGATCGGTAAAAATTGTGAGGCCATTATGGAAAGGGATGC GAGAGGGGCAGTTTGCCAGATTGTTCGGTATGAAAGAGCTCAAGGACCAATAATAGTGGTTAAAGAAGGCGAAGAACCAGCTCGCTTTTGGGATGCTTTC TCTTATTATTTACCTTTGATGGATAAATCTGCTAATGGAGGAGATCGCGGGGGATCCAGAGCTAAGATTTGCCCTGGTGAGAGGAAAGTAGATACATATA ATGTTGATTTTGAGATTTTCCAAAAAGCTATCAAGGGGGGTTTTGTGCCTCCATTTGCATCATCAGAGAATGAACTTGAAACCCATCTTCCTGCTAGAGA AAGCAGTTGGAGTGTGTTAAGGCGGAAGTTTGTCCCGGGTGATATGAAAGAGTTTGTCTCAGCACCGAAGATATTGCTTTCCAGGGTCTATTCAGACACT ATGATGATAGTGCACTCATCATCACCTTCTTCATCTTCGCTGTCATCTTCCTCCTCCTCTTCGCCTCTCTATCTCTCTCCAGATTCTATCTCTTCTGATT CTAGCACTAACTCAAAGTACTTTTCAGAATCCTCGCTAGATTCTCCTTCAGCAACTTCATGTTCTCTTCCAGTATCTTCAACCTTGTCTAATTTATCTAA CTTGTCTCTCACATCTAAATCTTCTTCCCAACCATTATCAAGTATTTATGGTGTCGATATGTCCCAGCAACATTTGCCGGCAGCTTCCTCACCATCCAAA AAATCTTCACTTTCACTTGCCGAGCGCAGAGGTAGCTTGTCAAAGTCTTTGAAGCTGCCGATGGTGACTGATAATATGAGGGTGAACAATACACCTCCAA GTTCTCTTGCCAGCCAGGAACAGGGTGCTAAGATAAACGAGAAAACTTTCTCTTGGTGCAATTCAGATAGTATAGACATTGTTTTAGAGTCCAAGGATGA TGTTAAAGGAGGTAGACATTCAATTCAACAGTGCAAGTCAAACATTTCTCTGGTCAGAGTAGCTAGTCCTGACTTATATCACAAGGAAGCCTCCACTGTA AATAATTTTGATGAACTGGGTAAAAATTGCCCTGTGGGAGAAAGCTCGGGGTGTTATGTGTCAAATGGGATGGAGGAAAGTGTTGAAGAAAGTTGTAAAG TAATGCAACCTTTGGTATGCCGCTGGCCCAGTCTAGAAAGGATTGCAGCATTGGGTACCAGTGATTTAGATTCTAAAACCGCCTTTGCCATTTTAGTGCC AACCAGAGGTGTAGGCAGAGATGAGACTAGGATTCTCTACTTTTGGGTAGGAAAATCATTTTCCGATGAGAAAAACATGATTCAGTTAGATAACAACAGA CTATTAGCAGATTCCGAACATATTTACTGGAGTCAAGCTGGTTATTATGTTCTAACTCAAATGGGTCTTCCGAAGGACCTTACCATTAAGGTGGTCAATG AAGATGAAGAACCAGCAGAATTTCTTGCACTGTTAAGTGCATTGTAG
AA sequence Show only first row Show all	>Potri.008G049900.1 pacid=42807081 polypeptide=Potri.008G049900.1.p locus=Potri.008G049900 ID=Potri.008G049900.1.v4.1 annot-version=v4.1 MVGKEDASNNPLAPCQLPSAGGSRKVFWRSASWSSSRTALQHPGTEEKDCVIDPNGNPAGNNSGNGQNRRYPAPLTPRSQQNCKARSCLPPLSIARRSLD EWPKAGSDDSGEWPQPPTPSGNKSGERLKLDLSSIQRTPDRNGGLVKKDRIAFFDKECSKVAEHVYLGGDAVARDREILKQNGITHVLNCVGFVCPEYFK ADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAF PLSPSSLLRMYRIAPHSPYDPLHLVPRMLNDPSPSALDSRGAFIVHIPSSIYVWIGKNCEAIMERDARGAVCQIVRYERAQGPIIVVKEGEEPARFWDAF SYYLPLMDKSANGGDRGGSRAKICPGERKVDTYNVDFEIFQKAIKGGFVPPFASSENELETHLPARESSWSVLRRKFVPGDMKEFVSAPKILLSRVYSDT MMIVHSSSPSSSSLSSSSSSSPLYLSPDSISSDSSTNSKYFSESSLDSPSATSCSLPVSSTLSNLSNLSLTSKSSSQPLSSIYGVDMSQQHLPAASSPSK KSSLSLAERRGSLSKSLKLPMVTDNMRVNNTPPSSLASQEQGAKINEKTFSWCNSDSIDIVLESKDDVKGGRHSIQQCKSNISLVRVASPDLYHKEASTV NNFDELGKNCPVGESSGCYVSNGMEESVEESCKVMQPLVCRWPSLERIAALGTSDLDSKTAFAILVPTRGVGRDETRILYFWVGKSFSDEKNMIQLDNNR LLADSEHIYWSQAGYYVLTQMGLPKDLTIKVVNEDEEPAEFLALLSAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	0	1	Pt-MKP1.2
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	1.00	0.9004	GTE910
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	2.44	0.8795
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	4.00	0.8694
AT3G22430			unknown protein		Potri.010G087400 [exp]	4.58	0.8784
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.001G070600 [exp]	5.65	0.8348
AT5G07610			F-box family protein (.1)		Potri.013G067800 [exp]	6.32	0.8546
AT2G30530			unknown protein		Potri.019G132300 [exp]	7.93	0.8257
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	9.48	0.8494
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	9.89	0.8089
AT2G38640			Protein of unknown function (D...		Potri.016G143000 [exp]	10.29	0.7742

Compare expression of checked genes

Potri.008G049900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.