Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55320 2223 / 0 ABCB20, PGP20 ATP-binding cassette B20, P-glycoprotein 20 (.1) AT2G39480 2214 / 0 ABCB6, PGP6 ATP-binding cassette B6, P-glycoprotein 6 (.1) AT2G47000 740 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT2G36910 515 / 1e-159 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28860 503 / 3e-155 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 499 / 1e-153 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 492 / 1e-151 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G27940 487 / 1e-149 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 469 / 3e-143 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G01830 439 / 4e-132 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210100 [exp] 2452 / 0 AT3G55320 2237 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Potri.014G113500 [exp] 782 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 753 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G081100 [exp] 520 / 1e-161 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 511 / 2e-158 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.016G093600 [exp] 501 / 8e-154 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139600 [exp] 495 / 1e-152 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.006G123900 [exp] 498 / 2e-152 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139700 [exp] 485 / 5e-149 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023437 [exp] 2273 / 0 AT3G55320 2420 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Lus10040315 [exp] 2241 / 0 AT3G55320 2409 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Lus10035834 [exp] 716 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10030674 [exp] 508 / 3e-157 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 507 / 6e-157 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 509 / 8e-157 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10036617 [exp] 448 / 3e-139 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10009989 [exp] 454 / 5e-137 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 448 / 5e-135 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10017271 [exp] 450 / 1e-134 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.008G050400.1 pacid=42806837 polypeptide=Potri.008G050400.1.p locus=Potri.008G050400 ID=Potri.008G050400.1.v4.1 annot-version=v4.1 ATGATGATCTCCAGGGGATTATTCGGATGGTCCCCGCCGCATATACAACCGTTGACGCCGGTCTCCGAGGTTTCCGAGCCGCCGGAGAGTCCGTCTCCGT ACTTAGATAACAGTGCGGAGGCGGCCGCGGCTGCTGCTGCGGCGGCTCAAGCGGAAGCAGAGGAGGAGATCGAGGAGGCTGAGGAGATGGAGCCGCCGCC AGCTGCTGTTCCTTTCTCCGGGTTGTTTGCTTGTGCTGATAGGTTAGATTGGGGGCTCATGATCGTTGGGTCGCTTGCAGCGGCTGCGCACGGGACTGCT CTTGTTGTTTACTTGCATTACTTTGGGAAGATTATTGGGGTTTTGAGTATTAAGCCGGAGGAGCGATTTGACAGGTTTACTGATCTTGCTATGCACATTG TTTATTTAGCCGTGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCCTGCTGGATTTTAACTGGGGAACGTCAGACCGCGGTCATCAGGTCAAAGTATGT TCAGGTATTGCTCAATCAGGACATGAGCTTTTTCGATACATATGGGAATAACGGGGATATTGTTAGCCAAGTATTGAGTGACGTGCTCCTCATTCAATCT GCATTGAGTGAAAAGGTTGGAAATTATATTCATAATATGGCTACATTTTTCAGTGGTCTTGCTATTGGATTTGTCAACTGCTGGCAAATTGCACTAATAA CATTAGCCACTGGCCCATTCATTGTTGCTGCTGGAGGTATCTCAAATATATTTCTTCATAGGCTTGCTGAGAGCATTCAAGATGCATATGCTGAAGCTGC TAGCATTGCTGAACAGGCAGTCTCTTATAGTAGGACCTTGTATGCATTCACAAATGAAACTCTGGCAAAGTATTCATATGCAACATCACTACAAGCAACT TTGAGATATGGTATTTTGATTAGCCTTGTTCAAGGACTTGGGCTTGGTTTTACGTATGGGCTTGCAATATGTTCTTGTGCCTTGCAACTTTGGGTTGGAA GGTTTCTGGTTACAAGTCATAAAGCTCATGGTGGTGAAATAGTAACAGCCCTGTTTGCTATAATTTTAAGTGGCCTTGGGCTGAATCAAGCTGCAACCAA TTTCTATTCATTTGACCAAGGACGAATTGCTGCATATAGACTCTTTGAGATGATAAGTCGGTCATCCTCCACAGTTAATCAGGATGGGAACAACCTAGTG GCAGTGCAAGGAAATATCGAGTTTCGAAATGTTTATTTTAGCTATCTGTCTCGTCCTGAGATTCCCATCTTGAGTGGATTTTACCTCACTGTACCAGCTA AAAAGACAGTGGCTCTTGTTGGAAGAAATGGTTCTGGAAAGAGCAGCATTATCCCACTCATGGAGCGCTTTTATGATCCTAACTTAGGAGAAGTTCTTCT TGATGGAGAGAATATTAAAAACCTGAAACTGGAATGGCTCAGAAGCCAAATAGGGCTGGTCACCCAGGAACCTGCCTTGCTGAGTTTGAGTATAAGAGAT AATATTGTATATGGACGAGATGCTACTTTGGATCAGATTGAGGAAGCTGCCAAAATAGCACATGCACACACATTTATCAGTTCACTTGAAAAAGGCTACG AGACACAGGTCGGTAGGGCTGGTTTAGCATTGACTGAGGAGCAGAAAATTAAACTTTCTATTGCCAGGGCAGTACTTTTAAATCCTACAATTCTTCTGCT TGATGAGGTTACTGGTGGACTTGATTTTGAAGCTGAGAGAGCAGTTCAAGAGGCACTAGATCTTCTCATGTTGGGACGTTCAACCATTATAATAGCTAGA CGTCTTAGTCTAATTAGGAATGCTGATTATATAGCTGTAATGGAGGAGGGTCAGCTTGTTGAAATGGGTACACATGACGAATTAATAACCTTAAATGGTC TATATGCAGAGCTTCTCAAATGCGAAGAAGCAGCAAAACTTCCAAGGAGGATGCCAGTTAGAAACTACAAGGAGACTGCTGCTTTCCAGGTTGAAAAGGA TCCTTCCACAGGCCACAGCTATCAAGAACCATCCTCCCCTAAAATAGCCAGGTCACCATCACTTCAGAGAGCTCCTGGTATATTTCGGCCTCCAGATAGC ATGTTTAATTCACAAGAATCACCAAAAGTTCTCAGCCCACCACCAGAGAAGATGATGGAAAACGGTCTTCCCTTGGATGGAGCTGATAAGGAACCATCAA TAAGAAGGCAGGATAGTTTTGAAATGAGACTACCTGAATTACCCAAGATTGATGTCCAGTCTGCACATAGACAGGCATCAAATGGTTCAGACCCTGAATC CCCTGTTTCTCCACTTTTGACATCTGATCCTAAAAATGAGCGTTCCCACTCACAGACTTTCAGTCGACCCCACAGTCACTCAGATGATGTTCCAATTAAA GTGAAGGAATCAAAGGATACAAAGCATCTGGAAGAACCATCATTTTGGAGACTAGCAGAGCTTAGTTTGGCAGAGTGGCTTTATGCTGTTTTAGGAAGCA TTGGTGCTGCTATTTTTGGTTCTTTCAATCCACTACTTGCTTATGTTATTTCACTGATAGTGACTGCTTATTATGGACGAGACATGCAGCAGGATGTAAA CAGGTGGTGCTTGATAATTGCCATCATGGGTATGGTGACTGTTGTTGCCAATTTCTTGCAGCACTTCTATTTTGGTATCATGGGAGAGAAAATGACTGAA CGTGTCCGCAGAATGATGTTTTCAGCAATGCTGCGGAATGAAGTCGGATGGTTCGATGAAGAGGATAATGGTGCTGACACATTATCCATGCGCTTGGCAA ATGATGCTACTTTTGTAAGAGCTGCATTCAGCAACCGACTTTCAATATTTATACAGGACAGTGCTGCAGTTATTGTGGCTGTTGTCATTGGGGTGCTGCT TCAGTGGCGATTGGCTCTTGTAGCACTGGCAACCTTGCCAGTTCTCACTGTCTCTGCAATTGCACAGAAGTTGTGGCTTGCTGGATTTTCCAGGGGCATC CAGGAGATGCACAGAAAGGCATCATTGGTCCTTGAGGATTCTGTTAGAAACATTTATACAGTTGTGGCATTCTGTGCGGGTAATAAAGTAATGGAGCTCT ACAGATTGCAACTGCAGAAAATATTTAAGCAGAGTTTTTTCCTTGGAATGGCCATTGGTTTTGGATTTGGTTTTTCTCAGTTTCTTCTTTTCGCCTGCAA TGCCCTTCTTCTCTGGTACACTGCATACTCTGTAAAGAATCACAATGTGAATCTTCATACGGCTCTCAAGGAGTATATGGTTTTTTCTTTTGCAACATTT GCACTGGTGGAGCCTTTTGGATTGGCTCCCTACATTCTTAAGCGGCGAAAATCTCTTATTTCAGTATTTGAAATTATAGATCGAGAACCTAAGATTGACC CAGATGATAACTCAGCACTGAAGCCTCCTAATGTTTATGGAAGCATTGAGTTGAAGAATGTGGATTTCTGTTATCCAACTCGTCCAGAAATGTTGGTATT GAGCAATTTCAGTCTCAAGGTGAATGGAGGACAAACTGTAGCTGTGGTGGGAGTTTCAGGGTCTGGAAAAAGCACTATAATTTCTTTAATTGAAAGATTT TATGATCCAGTTGCCGGTCAGGTCCTACTGGATGGCCGGGATTTAAAACTTTATAATTTGAGATGGTTGAGGAACCATCTTGGTCTTGTTCAGCAGGAAC CGATTATCTTCTCAACAACTATAAGAGAAAATATTATATATGCTAGGCACAATGCCAGCGAGGCTGAGATGAAAGAGGCTGCAAGAATTGCTAATGCTCA CCATTTCATCAGTAGTCTGCCTCATGGTTATGACACACATGTGGGAATGAGGGGCGTGGACCTTACCCCAGGGCAGAAGCAGAGAATTGCAATTGCTCGA GTGGTGTTGAAGAATGCACCCATCTTGTTATTGGATGAAGCCAGCTCATCCATCGAATCTGAATCAAGTCGAGTGGTACAAGAGGCACTAGATACTCTTA TTATGGGAAACAAAACTACCATTTTGATAGCTCATAGAACTGCAATGATGAGGCATGTTGACAACATTGTGGTTCTTAATGGAGGACGAATTGTCGAGGA AGGGGCCCATGATTCTTTGATGGCAAAGAATGGTTTGTATGTCCGTCTGATGCAACCCCACTTTGGAAAGGGTTTGCGACAACATCGGTTGATTTAA
AA sequence Show only first row Show all	>Potri.008G050400.1 pacid=42806837 polypeptide=Potri.008G050400.1.p locus=Potri.008G050400 ID=Potri.008G050400.1.v4.1 annot-version=v4.1 MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDNSAEAAAAAAAAAQAEAEEEIEEAEEMEPPPAAVPFSGLFACADRLDWGLMIVGSLAAAAHGTA LVVYLHYFGKIIGVLSIKPEERFDRFTDLAMHIVYLAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQS ALSEKVGNYIHNMATFFSGLAIGFVNCWQIALITLATGPFIVAAGGISNIFLHRLAESIQDAYAEAASIAEQAVSYSRTLYAFTNETLAKYSYATSLQAT LRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTSHKAHGGEIVTALFAIILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSTVNQDGNNLV AVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPNLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRD NIVYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR RLSLIRNADYIAVMEEGQLVEMGTHDELITLNGLYAELLKCEEAAKLPRRMPVRNYKETAAFQVEKDPSTGHSYQEPSSPKIARSPSLQRAPGIFRPPDS MFNSQESPKVLSPPPEKMMENGLPLDGADKEPSIRRQDSFEMRLPELPKIDVQSAHRQASNGSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDVPIK VKESKDTKHLEEPSFWRLAELSLAEWLYAVLGSIGAAIFGSFNPLLAYVISLIVTAYYGRDMQQDVNRWCLIIAIMGMVTVVANFLQHFYFGIMGEKMTE RVRRMMFSAMLRNEVGWFDEEDNGADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVVIGVLLQWRLALVALATLPVLTVSAIAQKLWLAGFSRGI QEMHRKASLVLEDSVRNIYTVVAFCAGNKVMELYRLQLQKIFKQSFFLGMAIGFGFGFSQFLLFACNALLLWYTAYSVKNHNVNLHTALKEYMVFSFATF ALVEPFGLAPYILKRRKSLISVFEIIDREPKIDPDDNSALKPPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF YDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRTAMMRHVDNIVVLNGGRIVEEGAHDSLMAKNGLYVRLMQPHFGKGLRQHRLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.008G050400 [exp]	0	1
AT2G15900			Phox-associated domain;Phox-li...		Potri.009G108300 [exp]	6.70	0.8488
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.009G158600 [exp]	9.16	0.8415
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	9.38	0.8458
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	10.67	0.8506
AT1G64140			unknown protein		Potri.001G097200 [exp]	11.61	0.8264
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	12.24	0.8442
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.014G138400 [exp]	13.74	0.8378
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.015G140100 [exp]	14.28	0.8059
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	15.29	0.8417
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	17.54	0.8307

Compare expression of checked genes

Potri.008G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.