Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39490 265 / 1e-84 F-box family protein (.1) AT3G03360 52 / 7e-07 F-box/RNI-like superfamily protein (.1) AT5G02910 50 / 1e-06 F-box/RNI-like superfamily protein (.1.2) AT2G39415 45 / 8e-06 F-box family protein (.1) AT5G50270 48 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 47 / 2e-05 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT2G29910 46 / 3e-05 F-box/RNI-like superfamily protein (.1.2) AT1G50980 46 / 3e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G47915 42 / 3e-05 F-box family protein (.1) AT1G32375 46 / 5e-05 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042900 [exp] 76 / 1e-14 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.004G034500 [exp] 66 / 1e-11 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.013G146800 [exp] 49 / 8e-06 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.015G002100 [exp] 43 / 0.0004 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G098700 [exp] 42 / 0.0007 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029952 [exp] 56 / 2e-08 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 53 / 4e-07 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10029953 [exp] 51 / 1e-06 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10018509 [exp] 47 / 2e-05 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10028722 [exp] 46 / 5e-05 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10030031 [exp] 43 / 6e-05 AT2G04230 53 / 4e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10000726 [exp] 44 / 0.0001 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10008295 [exp] 42 / 0.0002 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000727 [exp] 43 / 0.0003 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10008511 [exp] 43 / 0.0004 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.008G050800.1 pacid=42806645 polypeptide=Potri.008G050800.1.p locus=Potri.008G050800 ID=Potri.008G050800.1.v4.1 annot-version=v4.1 ATGGATGATTTGATCAGTAGTTTACCAGATGAGATCCTTTTCCGCATCTTTTCTTCACTCCCCTTTGAATCCGCCGCACAAACAATTTTTCTTTCAAACC GATGGAGGCTTCTGTGGGAGACTGCTTTAGTGCAACATGGCACTGAAGAGGATGTTGCTAATGCAATGTCTGGCTTCCTTGCCAATTTTGATGAGAAAGA TCCATCAAAGAATACCAGGAAGTTTCGGTTCCACTTTTGCAACGGTAGTGTCCTCTTGGTTATCATTGCACGTAATGGCAGCCTTCGTCTCCATTTCTCT ACTGGGAAACAAGAGTTTCCTCAGCAATTTGGCTTGCAATTAGAGTTCAATCATCAAAACCTAGCCAGCCAACCATCTCCGTCTTCCTTTTATGTTAAAA GTCTTCATCTGATGTCAGTGACCTATCTTACTAATGAGGTAGTTTCTTCCATAATGACAAACTTTCAGATTCTTGAGACCTTGAAAATCACTTGCTGCAA TTGTTTGCAATCTTTAAGTATTGGCTCTGATACAAAGCTTTTAAGCTTAACCATTTTCGACTGTCCACAACTAAAATCTCTCCACATCAGATCTTATAAG CTTCGCACTTTCCGCTATCGAGGACCGCTACCTTGGTTTAGGCCTGAATATCACTTTAACCTGGCTGATGCCTTGCTTGATTCCAGACAAGGCCCTGGCT ACAGAAGCTTCTCTGGCCGTGACTTTGACTCGGTTCTATTGACTATAAAGAATGTAAAAGTGCTTACTCTATGCAAATGGACTTTTGAGGCGTTGATCTG CCCATCGCTATCCACATTATTTGCAGATTTCCAATTCTATAATTTAAAAGAGTTGTGGTGGATTGATAATTCAAACGAAAGATATGACGGGGAAGCTTTA ATCTCTTTCCTGAAATTATGTCCTTCATTGCAGCAACTCTTCGTGACAATTGATCCTAAAAGCTACTTCATGAAAAGCAGCAGTAAATATTCTATACGAG CGGGCAGGAATACACAACTGCATCATCTAAAACTGGTTAAATTAGACGGATTTGAAAATCAAGCAGATGAAGTACTCTTGGCAGAACGTATAGGAAAGGT TGTCACTACCGAGCCACTTATCCTAACATCATCAGATCTGATTTGCTTGCGAAAATTTGTTGAGGTAAGCTCAAACCAATCAAAGCAGAACAGTACAGAC AAATTGGAAGAGGTAGCGCCCCAGTCATGTGAAAGGAAGTGTTCTTATAAATTTTTGGAAGTTCAGGATACGAAGGAACTGCATCCTAAACATGTTCATA TGGGTCTGTGA
AA sequence Show only first row Show all	>Potri.008G050800.1 pacid=42806645 polypeptide=Potri.008G050800.1.p locus=Potri.008G050800 ID=Potri.008G050800.1.v4.1 annot-version=v4.1 MDDLISSLPDEILFRIFSSLPFESAAQTIFLSNRWRLLWETALVQHGTEEDVANAMSGFLANFDEKDPSKNTRKFRFHFCNGSVLLVIIARNGSLRLHFS TGKQEFPQQFGLQLEFNHQNLASQPSPSSFYVKSLHLMSVTYLTNEVVSSIMTNFQILETLKITCCNCLQSLSIGSDTKLLSLTIFDCPQLKSLHIRSYK LRTFRYRGPLPWFRPEYHFNLADALLDSRQGPGYRSFSGRDFDSVLLTIKNVKVLTLCKWTFEALICPSLSTLFADFQFYNLKELWWIDNSNERYDGEAL ISFLKLCPSLQQLFVTIDPKSYFMKSSSKYSIRAGRNTQLHHLKLVKLDGFENQADEVLLAERIGKVVTTEPLILTSSDLICLRKFVEVSSNQSKQNSTD KLEEVAPQSCERKCSYKFLEVQDTKELHPKHVHMGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	0	1
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	1.41	0.8817
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G267900 [exp]	3.00	0.8245
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	3.87	0.8408
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	4.24	0.8376
AT3G12970			unknown protein		Potri.005G098300 [exp]	4.58	0.8470
AT1G13920			Remorin family protein (.1)		Potri.010G160900 [exp]	5.47	0.8672
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	7.00	0.8297
AT5G41620			unknown protein		Potri.014G093400 [exp]	7.74	0.8017
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	8.00	0.8291
AT4G31980			unknown protein		Potri.003G209000 [exp]	8.24	0.8412

Compare expression of checked genes

Potri.008G050800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.