Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13660 317 / 8e-101 unknown protein AT5G59830 246 / 3e-75 unknown protein AT3G53680 157 / 4e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 154 / 3e-39 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 73 / 3e-13 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 69 / 8e-12 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209300 [exp] 1035 / 0 AT5G13660 308 / 2e-97 unknown protein Potri.006G082800 [exp] 463 / 2e-157 AT5G13660 261 / 2e-80 unknown protein Potri.009G027800 [exp] 263 / 4e-81 AT5G59830 380 / 2e-129 unknown protein Potri.001G236000 [exp] 261 / 1e-80 AT5G59830 375 / 2e-127 unknown protein Potri.006G083600 [exp] 169 / 5e-44 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 88 / 1e-17 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 87 / 2e-17 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 77 / 2e-14 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 71 / 1e-12 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024426 [exp] 356 / 1e-116 AT5G59830 231 / 1e-70 unknown protein Lus10024427 [exp] 361 / 7e-112 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10005963 [exp] 345 / 6e-106 AT5G13660 216 / 4e-60 unknown protein Lus10025307 [exp] 320 / 4e-102 AT5G59830 238 / 6e-73 unknown protein Lus10005889 [exp] 216 / 3e-63 AT5G59830 278 / 2e-89 unknown protein Lus10040857 [exp] 214 / 5e-63 AT5G59830 262 / 2e-83 unknown protein Lus10025315 [exp] 147 / 6e-37 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 146 / 2e-36 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10003285 [exp] 118 / 2e-29 ND / Lus10035553 [exp] 92 / 4e-19 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G051300.2 pacid=42806270 polypeptide=Potri.008G051300.2.p locus=Potri.008G051300 ID=Potri.008G051300.2.v4.1 annot-version=v4.1 ATGCACAAAAGCTTTTGGATTACCAGAGATGCCGGGTGTTTAAATGATGGAGATGTGGGTTTTGATAATTCCTCGAGAATGGAAGCAAAGCATAGTCATC AGTGGTTTATGGATAGCCCTGGACCTGAATTGTTCAGCAACAAGAAACAAGCAGTCGAACATTCTAGCAACAACAGGCCAGTTGCGGGAATGTCACACAT GAACATTTCTCCATGGAATAATACTTCCAGCTTCCAGTCAGTTTCAGGACATTTCAGTGACCGTCTGTTTGGGTCTGAACCATTGCGGCCTAACAATGGT AGCAATTTTCTTTCTTCTGGCAATGGAAATATGAACATGGGAAGAAAGGATTTCATATATGGCAGCAATTGCTCTATGGGTTTGTCTATGACTCATAACA TTGAAGATCCGTCTGCATCCATTAGTTTTGGTGGCATCAGAAAAGTAAAAGTCAATCAAGTTAGAGACTCGAACATTTCTTCATCAGTGGGGCACTCATA TGCTAGAGGAGATGACAATATAATTTCAATGGGTCCTGCCTATAATAAGAGAGAAAGCAACACCATCTCTTTAGGCTCTACTTATAATAACGGGGATGAG AATACCATCTCAATCAGCCCCACATTCAGTAAGGCAGATGGCAATTTCATTTCAATACGTCATGCATTTAGTAAGGATGATGGAAATTTCATATCAATGG GCCACAATTATAACAAAGGAGATGAGAGTATGTTATCAATGGGCCAGCCCTTTGACAAGGAGGATGCCAATTTTATAACAATTGGTCCATCTTATGACAA GGAAAATAACCATTTCATATCAATGGCTCCCTCCTACAATAAGGGACATGACAATTTCATTTCAATGGGACCCTCCTATGATAAAACAAGTGAAAACTTC ATTTTGATGGGTTCCTCATTTAGCAAGGGAGGAGATAATATCATATCAAATGGTCCAGCATATGACAAGGCAGATTCTGACATTACATCCATGGCACCTG CCCAGGACAAAGGGAATTCTGGTATTCTATCTATGGGTCACAACTACAACAAGGGTGATAACAATGCCATTTCTTTTGGAGGCTTTCATGATGAACCTGA GACCAATTCCTCTGGCAATATTATTACTGGCTATGAGTTGCTAGTGAGCAATCAGGACACAGCTCAAACTTCAGAAGTATTGTCTCAGAACGTTTTGCCC CAGGCAAATGCAGATCCACAGTTGAATACTGATAGTGCTCCGAAGATCATTGCTGATCCACAGCTAAATAGTGCTCTGGAGGCTAATTCCAAAACTGATA CTGACATCAAGGGTAAAGAGCCAAAGGCATCAATCAATGCAGCCCCCAAGAATAAAGAGCCAAAGACACCAATTGATTCTGCCTCTAAGAATAAAGAGCT GAAGACATCGAAGAAGGTCCCTGCTAACAACTTCCCTTCAAATGTCAAGAGCTTGCTATCTACTGGCTTGCTTGATGGGGTCCCTGTTAAATATGTTTCC TGGTCAAGGGAGAAAACTCTTGAAGGAATCATAAAAGGGACTGGGTATTTATGTGGTTGCAAAGAATGCGGCTCTAACAAGGCTCTGAATGCATATGAAT TTGAGCGTCATGCTAACTGCAAGACCAAGCATCCCAATAACCATATTTTCTTTGAGAATGGGAAGACTATCTATGCAGTAGTTCAAGAGCTGAAGAACAC TCCTCAGGGGGTGCTGTTTAATGCAATCCAAACTGTTACCGGGTCTCATATTAATCAGAAGAATTTCCGTATCTGGAAAGCATCATATCAAGCTGCCACC CGTGAACTTCAGCGCATCTATGGAAAGGATGAAGTCACTGTGCCATCTTGA
AA sequence Show only first row Show all	>Potri.008G051300.2 pacid=42806270 polypeptide=Potri.008G051300.2.p locus=Potri.008G051300 ID=Potri.008G051300.2.v4.1 annot-version=v4.1 MHKSFWITRDAGCLNDGDVGFDNSSRMEAKHSHQWFMDSPGPELFSNKKQAVEHSSNNRPVAGMSHMNISPWNNTSSFQSVSGHFSDRLFGSEPLRPNNG SNFLSSGNGNMNMGRKDFIYGSNCSMGLSMTHNIEDPSASISFGGIRKVKVNQVRDSNISSSVGHSYARGDDNIISMGPAYNKRESNTISLGSTYNNGDE NTISISPTFSKADGNFISIRHAFSKDDGNFISMGHNYNKGDESMLSMGQPFDKEDANFITIGPSYDKENNHFISMAPSYNKGHDNFISMGPSYDKTSENF ILMGSSFSKGGDNIISNGPAYDKADSDITSMAPAQDKGNSGILSMGHNYNKGDNNAISFGGFHDEPETNSSGNIITGYELLVSNQDTAQTSEVLSQNVLP QANADPQLNTDSAPKIIADPQLNSALEANSKTDTDIKGKEPKASINAAPKNKEPKTPIDSASKNKELKTSKKVPANNFPSNVKSLLSTGLLDGVPVKYVS WSREKTLEGIIKGTGYLCGCKECGSNKALNAYEFERHANCKTKHPNNHIFFENGKTIYAVVQELKNTPQGVLFNAIQTVTGSHINQKNFRIWKASYQAAT RELQRIYGKDEVTVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13660			unknown protein		Potri.008G051300 [exp]	0	1
AT5G48385			FRIGIDA-like protein (.1)		Potri.002G239900 [exp]	1.41	0.8328
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	6.70	0.8091
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.002G018400 [exp]	7.48	0.7838
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	7.54	0.7738
					Potri.012G100001 [exp]	13.30	0.8139
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.001G377400 [exp]	15.29	0.7887
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.010G193000 [exp]	15.96	0.7786
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	18.16	0.8054
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	20.66	0.8048
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	24.65	0.8105

Compare expression of checked genes

Potri.008G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.