Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55410 1907 / 0 2-oxoglutarate dehydrogenase, E1 component (.1) AT5G65750 1906 / 0 2-oxoglutarate dehydrogenase, E1 component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209000 [exp] 2044 / 0 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.002G179500 [exp] 47 / 5e-05 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015205 [exp] 1963 / 0 AT5G65750 1889 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029462 [exp] 1823 / 0 AT5G65750 1755 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10029463 [exp] 1670 / 0 AT5G65750 1641 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005962 [exp] 1447 / 0 AT5G65750 1404 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10031476 [exp] 876 / 0 AT5G65750 856 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10005961 [exp] 518 / 6e-178 AT3G55410 498 / 9e-171 2-oxoglutarate dehydrogenase, E1 component (.1) Lus10002678 [exp] 50 / 9e-06 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF00676 [poplar] [flax] E1_dh Dehydrogenase E1 component CL0254 [poplar] [flax] THDP-binding PF02779 [poplar] [flax] Transket_pyr Transketolase, pyrimidine binding domain CL0254 [poplar] [flax] PF16078 [poplar] [flax] 2-oxogl_dehyd_N 2-oxoglutarate dehydrogenase N-terminus CL0591 [poplar] [flax] TKC_like PF16870 [poplar] [flax] OxoGdeHyase_C 2-oxoglutarate dehydrogenase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G051600.1 pacid=42806492 polypeptide=Potri.008G051600.1.p locus=Potri.008G051600 ID=Potri.008G051600.1.v4.1 annot-version=v4.1 ATGGCTTGGTTTAGAGCGGGTGCTAGTGTAGCAAGGCTTGCCATTAGAAGGACTTTATCTCAGGGTGGATCGTATGCAACGAGATCACGGGTTATACCTT CTCAGAGTAGATATTTCCATTCAACAGTGACAAAGTCTAAGGAGCAAACTGCGCCTGTCCCTCGTCCTGTCCCTCTCTCTAAGCTAACTGATAACTTCTT AGATGGGACCAGTAGTGTTTATTTAGAGGAGCTTCAGCGAGCATGGGAAGCTGATCCAAATAGCGTGGATGAGTCGTGGGATAATTTCTTTAGGAACTTT GTGGGCCAGGCTGCTACGTCTCCTGGAATTTCAGGCCAAACTATTCAGGAGAGTATGCGGTTGCTGCTGCTTCTCAGGGCTTACCAGGTTAATGGTCACA TGAAAGCCAAGTTGGATCCACTGGGGTTGGAAGAAAGAGAAATCCCAGATGAATTGGATCCTGCTCTATATGGTTTCACGGAAGCTGATCTTGATAGAGA ATTCTTTTTGGGAGTGTGGAAGATGGCTGGATTTTTGTCTGAAAACCGTCCAGTGCAGACTCTTAGGTCCATATTGACCAGGCTTGAGCAGGCTTATTGC GGGAGCATTGGGTACGAGTACATGCACATTGCAGATCGTGAAAAATGTAACTGGTTGAGAGACAAGATTGAAACCCCAACACCTATGCAGTACAATCGTC AGCGGCACGAAGTTATTCTTGATAGGTTAATATGGAGTACACAATTTGAGAACTTCTTGGCCACTAAGTGGACGGCAGCTAAGAGGTTTGGACTCGAAGG TGGAGAGACTTTGATTCCTGGAATGAAGGAGATGTTTGATAGGTCAGCTGATCTTGGGGTTGAGAGCATAGTTATTGGAATGCCTCACAGAGGAAGATTG AATGTACTGGGTAATGTGGTTCGGAAGCCGCTCCGTCAAATATTTAGCGAGTTTAGTGGTGGCACAAAACCTGTAGATGAAGTTGGGCTCTACACTGGAA CTGGTGATGTCAAGTATCACTTGGGAACTTCTTATGATCGTCCAACTAGAGGTGGGAAGAGAATCCATTTATCTTTGGTTGCAAATCCTAGTCACCTAGA AGCTGTGGATCCTGTTGTTGTTGGAAAAACTAGAGCCAAGCAATATTACTCGAATGATTCTGACAGGACTAAGAACATGGGGATTTTGATTCATGGTGAT GGTAGCTTTGCTGGGCAAGGGGTAGTGTATGAAACTCTACATCTTAGTGCACTGCCAAACTATACTACTGGTGGAACCATACATATTGTGGTGAACAACC AAGTTGCTTTCACAACTGATCCTAGGGCAGGAAGATCTTCACAATATTGCACTGATGTTGCCAAGGCCTTGAATGCACCTATATTCCATGTAAATGGAGA TGATATGGAGGCAGTTGTTCGTGTGTGTGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCAGATGTTGTGGTTGATTTAGTGTGCTATCGTCGTTTT GGGCACAATGAGATTGATGAGCCTTCTTTCACGCAACCCAAAATGTATCAGGTTATTCGGAATCATCCATCAGCTCTGGAGATCTATAAAAAGAAACTCT TAGAATCAGGACAGGTGACTGAAGAAGATATTCATAGGATACAGGAGAAGGTCCTTTCAATCCTCAATGAAGAGTTCTTGGCAAGCAAAGATTATGTTCC TAAAAGAAGAGACTGGCTTGCATCTCATTGGTCTGGTTTTAAGTCTCCCGAACAGCTTTCACGTGTCAGAAACACTGGAGTGAAACCTGAGATCTTGAAG AATGTAGGCAAAGCAATTACGACCCTTCCAGATAATTTTAAGCCTCACAGAGCTGTAAAGAAGGTTTACGATCAACGTGCACAAATGATTGAAACAGGGG AAGGAATTGATTGGGCTGTTGGGGAGGCTCTTGCTTTTGCCACACTGCTAGTAGAAGGCAACCATGTTCGATTGAGCGGTCAGGATGTTGAAAGAGGTAC TTTCAGTCATCGTCATTCAGTAATTCATGATCAGGAAACTGGGGAGAAGTATTGCCCCCTGGATCATGTCACCATCAACCAAAATGAAGAGATGTTTACT GTCAGCAACAGCTCCCTTTCAGAGTTCGGTGTTCTTGGATTTGAATTGGGTTACTCGATGGAAAGTCCAAATTCGTTGGTAATCTGGGAAGCTCAATTTG GTGACTTTGCAAATGGAGCTCAAGTGATATTTGATCAGTTCCTGAGCAGTGGTGAATCAAAATGGCTGCGACAAACTGGGCTTGTTGTGCTGCTTCCTCA TGGATATGATGGTCAGGGCCCTGAACATTCAAGTGGACGGTTGGAACGATTCCTTCAGATGAGTGATGACAATCCTTTTGTTATACCCGAGATGGAACCA ACTTTTCGTAAGCAAATCCAAGAATGCAATTGGCAGGTTGTAAATGTTACAACCCCTGCTAATTACTTCCATGTTTTGCGGCGTCAGATACACAGAGACT TCCGTAAGCCCCTTGTCGTGATGGCTCCCAAAAACCTACTTCGTCACAAGGAATGCAAATCAAATCTCTCAGAGTTTGATGATGTGCAAGGCCATCCTGG TTTCGACAAACAGGGGACCAGATTTAAACGTCTCATAAAGGATCAGAATGACCACTCGGACCTTGAGGAGGGTATCAGGCGTCTGGTTCTTTGCTCTGGA AAGGTTTATTATGAGCTTGATGAAGAGCGTAGAAAGGTCGAGGCAAAGGACATTGCAATTTGTAGGGTTGAACAACTATGCCCGTTCCCATATGATCTCA TCCAGCGCGAGCTTAAGCGATATCCAAGTGCGGAGGTTGTTTGGTGCCAGGAAGAACCAATGAACATGGGCGCATACAGTTACATTGCACCACGCCTATC CACTGCCATGAAAGCATTGGGCAGAGGAACTATGGACGACATCAAGTATGCTGGACGCGGGCCATCTGCTGCAACAGCCACTGGTTTCTACCAGATGCAT GTGAAGGAACAGGCTGAACTTCTGCAAAAAGCCATGCAACCTGAACCAATACAAATTCCTAATTGA
AA sequence Show only first row Show all	>Potri.008G051600.1 pacid=42806492 polypeptide=Potri.008G051600.1.p locus=Potri.008G051600 ID=Potri.008G051600.1.v4.1 annot-version=v4.1 MAWFRAGASVARLAIRRTLSQGGSYATRSRVIPSQSRYFHSTVTKSKEQTAPVPRPVPLSKLTDNFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF VGQAATSPGISGQTIQESMRLLLLLRAYQVNGHMKAKLDPLGLEEREIPDELDPALYGFTEADLDREFFLGVWKMAGFLSENRPVQTLRSILTRLEQAYC GSIGYEYMHIADREKCNWLRDKIETPTPMQYNRQRHEVILDRLIWSTQFENFLATKWTAAKRFGLEGGETLIPGMKEMFDRSADLGVESIVIGMPHRGRL NVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDSDRTKNMGILIHGD GSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDMEAVVRVCELAAEWRQTFHSDVVVDLVCYRRF GHNEIDEPSFTQPKMYQVIRNHPSALEIYKKKLLESGQVTEEDIHRIQEKVLSILNEEFLASKDYVPKRRDWLASHWSGFKSPEQLSRVRNTGVKPEILK NVGKAITTLPDNFKPHRAVKKVYDQRAQMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVIHDQETGEKYCPLDHVTINQNEEMFT VSNSSLSEFGVLGFELGYSMESPNSLVIWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSGRLERFLQMSDDNPFVIPEMEP TFRKQIQECNWQVVNVTTPANYFHVLRRQIHRDFRKPLVVMAPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSDLEEGIRRLVLCSG KVYYELDEERRKVEAKDIAICRVEQLCPFPYDLIQRELKRYPSAEVVWCQEEPMNMGAYSYIAPRLSTAMKALGRGTMDDIKYAGRGPSAATATGFYQMH VKEQAELLQKAMQPEPIQIPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55410			2-oxoglutarate dehydrogenase, ...		Potri.008G051600 [exp]	0	1
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	1.00	0.9202
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051900 [exp]	3.74	0.8723
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Potri.016G103100 [exp]	4.89	0.8295
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.006G052800 [exp]	6.92	0.8480
AT2G03630			unknown protein		Potri.010G158000 [exp]	7.07	0.8151
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Potri.004G163300 [exp]	9.48	0.7922	Pt-SPE1.1
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.002G107200 [exp]	14.28	0.8134	Pt-ZF14.1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014200 [exp]	16.91	0.8141
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	17.14	0.8232
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.003G086900 [exp]	18.02	0.8419

Compare expression of checked genes

Potri.008G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.