Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAB1.11
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46060 329 / 7e-116 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT5G59840 328 / 1e-115 Ras-related small GTP-binding family protein (.1) AT3G53610 328 / 2e-115 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT5G03520 310 / 2e-108 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT3G09900 308 / 2e-107 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT1G02130 212 / 5e-70 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT5G47200 202 / 5e-66 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17530 201 / 1e-65 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT3G11730 196 / 8e-64 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT4G17160 163 / 1e-50 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208900 [exp] 340 / 4e-120 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 323 / 1e-113 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 316 / 1e-110 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.001G080400 [exp] 206 / 1e-67 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 203 / 2e-66 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 203 / 2e-66 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 203 / 3e-66 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G081800 [exp] 202 / 3e-66 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.004G226600 [exp] 191 / 1e-61 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005890 [exp] 324 / 7e-114 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10007698 [exp] 320 / 1e-112 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 320 / 2e-112 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 317 / 2e-111 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10025309 [exp] 315 / 3e-110 AT3G46060 374 / 1e-133 RAB GTPase homolog 8A (.1.2.3) Lus10023430 [exp] 308 / 4e-107 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3) Lus10040856 [exp] 304 / 2e-106 AT3G46060 366 / 7e-131 RAB GTPase homolog 8A (.1.2.3) Lus10004944 [exp] 297 / 3e-103 AT3G46060 348 / 1e-123 RAB GTPase homolog 8A (.1.2.3) Lus10003984 [exp] 244 / 4e-83 AT3G46060 289 / 5e-101 RAB GTPase homolog 8A (.1.2.3) Lus10000595 [exp] 206 / 3e-67 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.008G051700.6 pacid=42806444 polypeptide=Potri.008G051700.6.p locus=Potri.008G051700 ID=Potri.008G051700.6.v4.1 annot-version=v4.1 ATGGCTGCACCGCCAGCAAGGGCCCGTGCTGATTATGATTACTTGATTAAGCTTCTCTTGATTGGGGATAGCGGTGTGGGGAAGAGTTGTCTGCTTTTGC GTTTTTCTGATGGTTCCTTCACAACCAGTTTCATTACCACCATCGGCATTGATTTCAAGATAAGAACCATTGAGCTTGATGGTAAACGGATTAAACTACA AATATGGGATACAGCAGGCCAGGAACGTTTCCGAACTATCACAACAGCCTATTACCGAGGAGCCATGGGGATTTTGCTCGTTTATGATGTTACTGATGAA TCATCTTTCAACAATATTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAACAAGATACTGGTGGGAAACAAAGCAGACATGGATG AGAGCAAAAGGGCTGTGCCTACCTCCAAGGGTCAAGCTCTTGCAGACGAGTATGGGATCAAGTTCTTTGAAACTAGTGCTAAGACAAATTTGAACGTGGA GGAGGTTTTTTTTTCAATTGCAAGGGATATCAAGCAAAGGATCTCGGAAACTGATTCCAGGGCAGAGCCTCAAACAATCAAGATTAACCAACCAGATCCA TCAGCCAGTGGTGGCCAAGCTGCCCAAAAGTCAGCTTGCTGTGGTTCATAA
AA sequence Show only first row Show all	>Potri.008G051700.6 pacid=42806444 polypeptide=Potri.008G051700.6.p locus=Potri.008G051700 ID=Potri.008G051700.6.v4.1 annot-version=v4.1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRISETDSRAEPQTIKINQPDP SASGGQAAQKSACCGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.008G051700 [exp]	0	1	Pt-RAB1.11
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.015G113000 [exp]	2.44	0.8452	ARA7.2
AT5G20090			Uncharacterised protein family...		Potri.012G095133 [exp]	3.46	0.8521
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G082700 [exp]	6.32	0.8463
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.002G018700 [exp]	9.38	0.8057	Pt-SKP1.2
AT4G08240			unknown protein		Potri.002G086200 [exp]	10.95	0.8044
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.001G293100 [exp]	12.00	0.8098
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	13.07	0.7472
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.018G110700 [exp]	13.41	0.7922
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Potri.008G035800 [exp]	14.49	0.7820	Pt-ARA6.2
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.003G136200 [exp]	14.69	0.7881	Pt-UBC.9

Compare expression of checked genes

Potri.008G051700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.