Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39620 816 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 473 / 1e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 461 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21300 451 / 3e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 451 / 2e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G40720 439 / 2e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 437 / 4e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 437 / 2e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 416 / 1e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74600 415 / 3e-131 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 506 / 5e-164 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 496 / 2e-162 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 479 / 2e-154 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 461 / 5e-148 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 449 / 5e-145 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 446 / 4e-143 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 449 / 5e-142 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 444 / 5e-141 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 442 / 6e-141 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018978 [exp] 488 / 3e-157 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 446 / 2e-142 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 443 / 3e-142 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 444 / 2e-141 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 438 / 2e-139 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 435 / 1e-138 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 431 / 7e-138 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017082 [exp] 434 / 1e-137 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10007806 [exp] 432 / 2e-137 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012873 [exp] 430 / 2e-137 AT2G40720 946 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G052200.1 pacid=42807868 polypeptide=Potri.008G052200.1.p locus=Potri.008G052200 ID=Potri.008G052200.1.v4.1 annot-version=v4.1 ATGAGCAAACAGGCGCTACCCTCCTCGCGTGGATTCTTCCATGAACTCGCGTCTAGAAATAAAGCTCCTATTTTACCCCCAAACCACATTCGAAATTACT CCAACTACGTTAGCCTACTCTCCTCATGCAAGACGCTGAACTCTCTACTTCAAATTCATGTTCGTTTGACAGTGTCAGGCCTTCAAAATGACCATTTAAC TAATGCCCACCTCATTAAATCTTACCTATTGTTTCTGAAATGTAACTATGCTCGTTTTCTGTTCGATTCTTTGCCAAACCCAAGTGTCATGCTATACAAT TCAATAATTAGAGCGTATTCAAGAACAAAAAATCACCAAGAAGCTATAAATATATACCATTGTATGTTGAATAAAGGCTTGGAGCCAGACAAGTATACTT TCACCTTTGTTTTGAAAGCTTGTACTGGTGCATTATACTTTAAAGAGGGTATTTTGGTACATAAGGATATAATCGTTAGGGGATTAGAGCGTGATGCTTT TATTGGGACTAGTCTTGTTGATATGTATTGTAAAATGGGTGATTTAAAGTTAGCTAGAAAAGTGTTCGATAAAATGCCTGAGAAAGATGTTGTAGCTTGG AGTGCAATGATTTTGGGTTTGTCACAGAGCGAGGATCCTAATGAGGTATTTGGGTTCATTAGGAGTATGCAGTTGAGTGGAGTGGAGCTCAATTTAGTCA GCATTTTGAACTTGGTTCCTGCCGTTTCGAGACTGGGTGATATTGATGCCTGTAGGTGTATTCATGGATATGTGATTAGAAGGGGTTTTGATGCAATTGT TTCGAATGGTTTGATTGATATGTACTCCAAGAGTGGGAATATAGATGTTGGTCGCCAGATTTTTGAGTATATGCCAGACAAGGATGATGTTTCATGGGGA ACGATGATGGCAGGGTATGCACATAGCGGATGTTTTCTTGAGGTTTTGGAGTTGTTTGATCGTGGGAGAGGAGAGAATGTTAGGATGAATAAAGTATCTG TTACAAGTGCTCTTACGGCTGCTGCAGAGATGAGAGCTTTAGGGAGAGGTACAGAGATCCATGACTTTGCTAGACAACAAGGGATAGATTCAGATGTTGC AGTTGCTACTCCTATAATGACTATGTATGCTAGATGTGGAGAGGTGGACACAGCTAAGCAGTTGTTTCAGGGAATTAAAGGAAGGGATTTGGTTGCCTGG TCAGCAATTATAGCTGCTTTCGTTCAATCAGGGTATCCTCAAGAAGCACTGTCACTGTTTCGAAGTATGCAGAACGAAGGTTTGCAAGCAAACAAGGTCA TTCTCTTGAGTTCTCTTCCAGCTTGTGCTGAAGTATCATCCCTGAAATTGGGGAAAAGCATGCACTGCTGTGCTGTCAAGGCCAATGTTGATTTAGATAT TTCAGTTGGAACAGCCTTGGTCTCCATGTATGCTAAATGTGGATTCTTTGCTTTGGCACTGACTCTATTTAATAGAATGCCATGCAAAGATGTAGTGACA TGGAATGCTATGATAAATGGGTACGCCCAAATTGGGGAACCATTTCCTGCATTAGAGATGTTCCATAAATTACAGCTATCTGAATTAAATCCAAACTCCG GAACTATGGTGGGTTTGCTTCCAGCATTTGCTCTTCTAAATGACCTGGACCAAGGATCCTGCATCCATGGGAAAATTATAAAGTGTGGTTTTGAATCTGA ATGTCATGTAAAGACTGCTCTCATTGACATGTATGCTAAATGTGGAAGCTTGTCCGGGGCCGAGTTCTTGTTTCATAGAACAGGGTGTAGAAAGGATGAG GTGTCTTGGAATGTGATGATTGCTGGATACATGCACAGTGGACATGCCATAGATGCCTTTTCTGCTTTTTGCCAGATGAAATTAGAGAATATCCAACCTA ATATAGTCACAATTGTGACTGTCCTTCCTGCAGTAGCGCATCTGTCAGCCTTAAGGGCTGGCATGACTCTCCATGCATATGTTATCCGAATGGGATTTCA GTCTAAAACACCTGTTGGGAATTGTCTTATCGATATGTATGCTAAATGTGGATGGCTTGATCACTCTGAAAAGATATTCCATGAGATGAAGAATAAAGAC ACTGTCTCATGGAATGTTATGCTTGCAGGATATGCAGTTCATGGGCGCGGGAGCTGTGCTATTGAACTTTTCTCACGCATGCAGGACAGTGAAATCAGGC TTGATTCTTTTTCCTTCATCAACGTGTTGTCAGCTTGCAGGCATGCAGGTTTAATAGGAGAAGGGAGGAAAATATTTGATTCCATGAGCAAACAGCACCA GCTTGAACCAGATTTGGAACACTACGCTTGCATGGCAGATCTACTAGGTCGTGCTGGATTATTCAATGAAGTTTTGGACTTGATCAAGTCAATGCCAATG GAACCTGATGCTGGAGTGTGGGGAGCCTTATTGGGGGCATCTACAATGCATTCGAATGTGCAGTTAGCAGAATTTGCACTGCATCATCTTGACAAACTCG AGCATAAAAATCTGACACATTATGCAGCTTTATCAAATACATATGCTAGATCTGGAAGGTGGGCAGATGTAGGCAATACAAGATCAAAGATAACCAAAAC AGGACTAAGGAAAAGTCCAGGATATAGTTGGGTTTGA
AA sequence Show only first row Show all	>Potri.008G052200.1 pacid=42807868 polypeptide=Potri.008G052200.1.p locus=Potri.008G052200 ID=Potri.008G052200.1.v4.1 annot-version=v4.1 MSKQALPSSRGFFHELASRNKAPILPPNHIRNYSNYVSLLSSCKTLNSLLQIHVRLTVSGLQNDHLTNAHLIKSYLLFLKCNYARFLFDSLPNPSVMLYN SIIRAYSRTKNHQEAINIYHCMLNKGLEPDKYTFTFVLKACTGALYFKEGILVHKDIIVRGLERDAFIGTSLVDMYCKMGDLKLARKVFDKMPEKDVVAW SAMILGLSQSEDPNEVFGFIRSMQLSGVELNLVSILNLVPAVSRLGDIDACRCIHGYVIRRGFDAIVSNGLIDMYSKSGNIDVGRQIFEYMPDKDDVSWG TMMAGYAHSGCFLEVLELFDRGRGENVRMNKVSVTSALTAAAEMRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQGIKGRDLVAW SAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVT WNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDE VSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKD TVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPM EPDAGVWGALLGASTMHSNVQLAEFALHHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	2.00	0.9161
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	3.16	0.9167
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	4.58	0.9161
					Potri.018G133300 [exp]	4.69	0.8858
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	5.00	0.9132
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	5.65	0.9157
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	6.92	0.8956
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	7.74	0.9006
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	8.48	0.9125
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	8.71	0.8923

Compare expression of checked genes

Potri.008G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.