Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13680 1547 / 0 AtELP1, ELO2, ABO1 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208400 [exp] 2275 / 0 AT5G13680 1564 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040306 [exp] 959 / 0 AT5G13680 880 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1) Lus10023427 [exp] 838 / 0 AT5G13680 781 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1) Lus10023426 [exp] 745 / 0 AT5G13680 645 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF04762 [poplar] [flax] IKI3 IKI3 family
Representative CDS sequence Show only first row Show all	>Potri.008G052400.3 pacid=42806457 polypeptide=Potri.008G052375.1.p locus=Potri.008G052400 ID=Potri.008G052400.3.v4.1 annot-version=v4.1 ATGAAAAACCTGAAGCTACACTCGGAGATCTCTCAGAATCTGGAATTACAATCGCAGCAAGAAGTTCTCCTCTTCTCCGCTTTCGACTTCGAACGCAACC GTCTCTTCTTCGCTTCCTCCAACAATTTCATTTACACAGCTGATCTTTCTTCTTTCCAAAATGGAAAATCGAAAAGCTTGTTGTTAGCGTCGTCGGTGAT TAATCAAATTGAATTGGAAGATGGAGACTTAATTACGGCATTTGATTATCTATTGGAGAAAGAAGCCTTAATTATTGGAACGGAAAATGGTCTCTTATTA TTGCATAATGTTGATGATAATTCTACTGAAATCGTTGGTCAAGTCAATGGCGGTGTTAAGTGTATCTCGCCGAGTCCTGACGGCGATTTGCTTGCTATCC TCACTGGTTTCCGACAAATGCTAGTTATGACTCATGATTGGGATTTGTTGCATGAAACCGCAGTTGGTGATGGTGATGGTGCTGGTCTTGACGTAAGTGA ATTTGATGGCAAGGATATGTTTGAGAGTTCTGTTTCATGGCGAGGTGATGGGAAATATTTTGCGACTTTAAGTGAAGCGAGTGATTCTTCTCTAATGTTT AAGAGAATTAAGGTTTGGGAACGTGATTCAGGTGCGTTACATTCTACATCGGATTCAAAGATATTTATGGGGGCAGTTTTGGAATGGATGCCGAGTGGAG CGAAAATTGCTGCTGTGTATGATAGGAAAGTGGAGAATAGGTGTCCTGATATAGTTTTCTATGAGAAGAATGGATTGGTGAGGAGTTCTTTTAGTATTAA AGAAGCAGTGGATGCAAAGGTGGAAAGTCTTAAGTGGAATTGTAGTTCGGACCTTCTTGCATCTGTTGTTAGATGTGAGAAATACGATGCTGTTAAGGTC TGGTTTTTCAGCAACAATCATTGGTATTTGAAACATGAAGTTAGATACTCGAGACAGGATGGAGTGAGGTTCATGTGGGATCCAGTAAAGCCTCTACAGT TTATTTGTTGGACCCTTGGAGGCCAGATCACAAGTTACAACTTTGCCTGGAATTCTGCTGTGGTGGAGAACTCAATAGCATTAGCCATTGATGGCTCCAA AATACTTGTAACTCCACTTTCTTTATTACTAATGCCACCTCCCCTTCATTTATTCAGCCTCAAATTTCCAAGTGCAGTAAGAGACGTGGCTTTATATTCC AATAATTCTAAGAATAGTGTAGCTGCATTTTTATCAGATGGCTCTTTGGGTGTTGTAGAACTTCCTGACCCAGATACATGGGAGGAGCTTGAAGAAAAGG AATTTGGTGTTGAAGCTTCTATTTCTGAGACAGGTTTCGGATCCTTTGTACACCTCACATGGCTGGATTCTCACATATTACTTGCTGTTTCGCATTATGG CTTCACTCAAAGTACTTGTGCATCCGACAGCTCAATGGGCGAGGATGGACTTAGTGGTTTCTATTTGCAGGAAATTGAACTTGTGTGTTCCGAGGATCAT GTACCAAGTTTGGTAACTGGATCAGGCTGGCATGCAAGGATTTCCCATAGGAACTATTTGGAAGGGCTTGTGATTGGCATTGCTCCTAATCCTGCTAAGA AATGTTCGGCTTTTGTTCAGTTTGATGGAGGAAAAATTGTTGAGTATGCATCAATATTGGGCTTGGCTGGAACTGGAGGTTCAACAAAACATGATGACAT GAGCTTTTCATCATCTTGCCCTTGGATGAGTGCGGCTCAGGTCAGTGACAGTGGGTCGTTAAAGCCCTTGCTTTTTGGTCTTGATGACATTGGGAGGCTG CATTTTGGTGGGAAAGTACTATGCAACAACTGCAGTAGTTTCTCATTGTACTCTAATTTGGCTGATCAAGTAATCACACATTTGATACTTTCCACCAAAC AAGACTTTCTCTTTGCTGTGGAAATCAGTGATATACTGCATGGAGAATTAGAGTTAAAATATGAGAACTTTGTTCACACAGGTAACAGAAGAAAAGAAGA AAACATGAACTTCATAAATATTTGGGAAAGAGGTGCCAAAATTATTGGTGTCCTGCATGGTGATGCTGCTGCTGTCGTTATACAGACAACTAGGGGAAAT CTGGAATGCATTTACCCTAGAAAGCTTGTCCTTGCTTCAATTGTCAATGCTTTGATCCAAAGGCGTTTTAGGGATGCACTGCTGTTGGTCAGGCAACATA GAATAGATTTCAATGTTATTGTTGACCATTGTGGATGGCAAACTTTTATTCAGTCAGCTTCAGAATTTGTCAAACAGGTTAACAATTTGAGCTATATAAC TGAGTTCATTTGTTCCATAAAAAACGAGAACATTATGGAGACTCTATACAAAAACTATATCTCTACACCCTACCAAAACGGAGGTGGAGATGTTCAAGCT AAGGACGTCATGGGTTTTGATGCTTCCAGTAAGGTTTCTGCTCTGCTCCTGGCCATAAGGAAGGCTCTTGAGGAACAAGTCTCCGAAAGCCCTGCAAGGG AGCTTTGTATTCTGACCACTCTGGCACGTAGTGATCCTCCTGCGCTTGAAGAAGCTTTGGAAAGGATCAAAGTTATTCGTGAAATGGAATTATTAGGTTC AAGTGGCCCTAGGAGAATGTCCTATCCTTCTGCTGAAGAAGCTCTAAAGCATCTGTTGTGGTTATCTGATTCTGATGCTGTATTCGAAGCTGCCTTGGGA CTTTATGATTTGAACCTTGCAGCTATTGTGGCACTGAACTCTCAACGAGACCCCAAGGAATTTCTTCCTTATCTACAAGAATTAGAACGCATGCCAAGCC TCATAATGAGCTACAATATCGACCTTCGGTTACACCGGTTTGAGAAGGCTCTCCGACATATTGTTTCTGCTGGTGACGCTTATTATTCAGATTGTATGGA CCTCATGAACAAAAATCCTCAATTATTTCCTCTGGGTCTTCAATTGATTACTGATCCTGCAAAAAAAATGCAAGCCCTTGAGGCCTGGGGTGATCATCTT AGTGATGAGAAATGCTTTGAGGATGCCGCAACAACTTTTCTGTGTTGTTCCAGTTTGAAAAATGCCTTGAAGGCATATCGTGCTTGCGGTAATTGGAGTG GGGTGCTTTCTGTTGCTGGGCTCCTTAAAATGGAAAAAAATGAGATAATGCAACTTGCTTATGATCTTTGTGAAGAGCTCCAAGCACTTGGTAAACCAAG AGACGCTGCCAAAATTGCTCTGGAGTATTTGGGAGATGTTAACAGTGGGATTAATTTGTTAATTAGTGGAAGGGACTGGGAGGAGGCTTTGAGGGTTGCT TTTATGCATAGTCAAGAGAATCTGGTATTGACAGTGAAGAATGCAGCTTTGGATTGTGCAAGAACACTAATCAGTGAATACAAGGAAGGTTTGGAGAAGG TAGGGAAGTACTTGGCTCGTTATTTAGCTGTTCGACAGAGAAGATTACTTCTGGCAGCAAAGCTTCAGTCAGAGGAAAGGTCAATGAATGATCTGGATGA CGATACTGTTTCAGAAGCTAGCAGTAATTTCAGTGGCATGAGTGCCTACACCACAGGAACAAGGAAGGGCTCTGCCTCTTCTGTGACCTCCAGTGTCACT AGTAAGGCTAGAGACATGAGGCGTCAACGGAAAAGAGGAAAGATTCGCCCTGGCAGCGCTGATGAGGAGTTAGCACTGGTAGAGCATTTGAAAGGCATGT CTCTAACAGCTGGAGCAAAGCATGAGCTTAGATCTTTATTAGTTACACTTGTGATGCTTGGTGGTGAAGAGATTGCAAGAAAGCTCCAATTTGCTGGAGA GAATTTTCAACTGTCTCAGATGGCAGCAGTCAAACTAACTGAAGATACGATTCCTACCGATATCTTAAGTGAGCAGGCACACAATTTGGAGCAATATGTT CAAAAATTGAGAAACGAACTGCCAAATTTAGATTCGTTTTCTTGGCGATATAAAGTATTCATTTCTCCTTAA
AA sequence Show only first row Show all	>Potri.008G052400.3 pacid=42806457 polypeptide=Potri.008G052375.1.p locus=Potri.008G052400 ID=Potri.008G052400.3.v4.1 annot-version=v4.1 MKNLKLHSEISQNLELQSQQEVLLFSAFDFERNRLFFASSNNFIYTADLSSFQNGKSKSLLLASSVINQIELEDGDLITAFDYLLEKEALIIGTENGLLL LHNVDDNSTEIVGQVNGGVKCISPSPDGDLLAILTGFRQMLVMTHDWDLLHETAVGDGDGAGLDVSEFDGKDMFESSVSWRGDGKYFATLSEASDSSLMF KRIKVWERDSGALHSTSDSKIFMGAVLEWMPSGAKIAAVYDRKVENRCPDIVFYEKNGLVRSSFSIKEAVDAKVESLKWNCSSDLLASVVRCEKYDAVKV WFFSNNHWYLKHEVRYSRQDGVRFMWDPVKPLQFICWTLGGQITSYNFAWNSAVVENSIALAIDGSKILVTPLSLLLMPPPLHLFSLKFPSAVRDVALYS NNSKNSVAAFLSDGSLGVVELPDPDTWEELEEKEFGVEASISETGFGSFVHLTWLDSHILLAVSHYGFTQSTCASDSSMGEDGLSGFYLQEIELVCSEDH VPSLVTGSGWHARISHRNYLEGLVIGIAPNPAKKCSAFVQFDGGKIVEYASILGLAGTGGSTKHDDMSFSSSCPWMSAAQVSDSGSLKPLLFGLDDIGRL HFGGKVLCNNCSSFSLYSNLADQVITHLILSTKQDFLFAVEISDILHGELELKYENFVHTGNRRKEENMNFINIWERGAKIIGVLHGDAAAVVIQTTRGN LECIYPRKLVLASIVNALIQRRFRDALLLVRQHRIDFNVIVDHCGWQTFIQSASEFVKQVNNLSYITEFICSIKNENIMETLYKNYISTPYQNGGGDVQA KDVMGFDASSKVSALLLAIRKALEEQVSESPARELCILTTLARSDPPALEEALERIKVIREMELLGSSGPRRMSYPSAEEALKHLLWLSDSDAVFEAALG LYDLNLAAIVALNSQRDPKEFLPYLQELERMPSLIMSYNIDLRLHRFEKALRHIVSAGDAYYSDCMDLMNKNPQLFPLGLQLITDPAKKMQALEAWGDHL SDEKCFEDAATTFLCCSSLKNALKAYRACGNWSGVLSVAGLLKMEKNEIMQLAYDLCEELQALGKPRDAAKIALEYLGDVNSGINLLISGRDWEEALRVA FMHSQENLVLTVKNAALDCARTLISEYKEGLEKVGKYLARYLAVRQRRLLLAAKLQSEERSMNDLDDDTVSEASSNFSGMSAYTTGTRKGSASSVTSSVT SKARDMRRQRKRGKIRPGSADEELALVEHLKGMSLTAGAKHELRSLLVTLVMLGGEEIARKLQFAGENFQLSQMAAVKLTEDTIPTDILSEQAHNLEQYV QKLRNELPNLDSFSWRYKVFISP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.008G052400 [exp]	0	1
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	4.47	0.8636
AT5G65750			2-oxoglutarate dehydrogenase, ...		Potri.010G209000 [exp]	5.65	0.7968
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	5.74	0.8691
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	15.87	0.8173
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	16.00	0.8179
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	16.61	0.8026
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	18.00	0.8322
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	21.74	0.8038
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	21.77	0.7209	Pt-XPO1.1
AT4G28200			unknown protein		Potri.007G040000 [exp]	22.58	0.8148

Compare expression of checked genes

Potri.008G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.