Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54980 88 / 2e-23 Uncharacterised protein family (UPF0497) (.1) AT1G17200 76 / 1e-18 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G14380 54 / 3e-10 Uncharacterised protein family (UPF0497) (.1) AT4G16442 45 / 6e-07 Uncharacterised protein family (UPF0497) (.1) AT2G35760 41 / 1e-05 Uncharacterised protein family (UPF0497) (.1) AT3G16300 41 / 1e-05 Uncharacterised protein family (UPF0497) (.1) AT1G79780 37 / 0.0005 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208300 [exp] 148 / 2e-47 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 72 / 4e-17 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.001G436400 [exp] 68 / 2e-15 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.006G016900 [exp] 39 / 0.0001 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 39 / 0.0001 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 37 / 0.0005 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021788 [exp] 103 / 2e-29 AT5G54980 177 / 6e-57 Uncharacterised protein family (UPF0497) (.1) Lus10034604 [exp] 100 / 3e-28 AT5G54980 176 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Lus10026196 [exp] 67 / 3e-15 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10042471 [exp] 67 / 3e-15 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10039060 [exp] 43 / 3e-06 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 43 / 5e-06 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.008G052451.1 pacid=42808534 polypeptide=Potri.008G052451.1.p locus=Potri.008G052451 ID=Potri.008G052451.1.v4.1 annot-version=v4.1 ATGTTTTTTGTTAGTGGAATCTGTGCTAGTTATGCTTTTCTTGCTGCTGTCTCCACATGGATCAGATGCTTTGTTACTAAGGCTTGGCTGTTCTTTGTCT CTGACCAGATTGTAGCTTACTTGATGGTTACATCGGGGACCGCGGTCTTCGAGATATTATACCTGGCTTACAATGGTGATAGAGAAGTCGTATGGAGTGA AGCCCTCTCTTCTTATGGGAAGTTTTGCTATAGAGTGAAGGTACAGTGA
AA sequence Show only first row Show all	>Potri.008G052451.1 pacid=42808534 polypeptide=Potri.008G052451.1.p locus=Potri.008G052451 ID=Potri.008G052451.1.v4.1 annot-version=v4.1 MFFVSGICASYAFLAAVSTWIRCFVTKAWLFFVSDQIVAYLMVTSGTAVFEILYLAYNGDREVVWSEALSSYGKFCYRVKVQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54980			Uncharacterised protein family...		Potri.008G052451 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015750 [exp]	2.82	0.8495
AT2G18420			Gibberellin-regulated family p...		Potri.012G076700 [exp]	7.93	0.7649
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	9.94	0.8393
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.007G005700 [exp]	11.48	0.7535
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.006G115700 [exp]	11.66	0.7511
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.006G137100 [exp]	13.41	0.7565
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.014G055300 [exp]	14.38	0.8025
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024316 [exp]	17.29	0.7643
AT2G40410			Staphylococcal nuclease homolo...		Potri.010G182500 [exp]	18.13	0.7340
					Potri.019G002628 [exp]	18.43	0.8016

Compare expression of checked genes

Potri.008G052451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.