Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39580 818 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208200 [exp] 2631 / 0 AT2G39580 834 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029459 [exp] 1270 / 0 AT2G39580 746 / 0.0 unknown protein Lus10005958 [exp] 1051 / 0 AT2G39580 565 / 1e-173 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G052500.1 pacid=42805836 polypeptide=Potri.008G052500.1.p locus=Potri.008G052500 ID=Potri.008G052500.1.v4.1 annot-version=v4.1 ATGGCGTCAAATAACCCTAGTCAACCAGAGTTCGCGACCAAAACAAGAGAAGAAGGAGAGGTCTCTTCTTCATCCAACGACGACCAAAATCCTGTTTGCG CTTCTGCACTGTTTGCTGATGCTTTTAACACACCTGCTTCCGCAAGGACCATTCCGTTTCATCCGATGAACAAATTCACTTTATCCAATCGGGCTGGCAA GGCCATTTTTAGCACTAATCCCGCAAGATGTGTTGATCCGAATCTCCAAACATCACAACCAAATAATAACAAGAGCTTTGAGAAGAATAGGGTGCCACAC ATATCTGCTAATCCTGGAAAGTGTGCATCTTCAGGGGCTAATGATAACTTAGTGATAAGATTTTCAGATGATGAAAGTGGGAGTGAATCTGAAGATAGAG ATGACAAGCCTTTAAAAACTAAACCCAATACAACTGTGGTTAATGGAAATGGAAGGCTGCCCCCCATTTTACCGGCAAAATCAAGCATGTCGCTGCAGAC TTCTAGAAATGTGAACAGTATTCCCAAGAAATCATCAATGAGTCGCACATTTAACTCTTCAATGACAAAGATAAATGGAGTTGCCAATTCCAAGGGTGCT GACTCCTCGTCTGTTGGGCAAGGTTCTCAAGTAAAAAATATTAATTCCATCAAAAGAAATCTAGCAAGCCAAGAGCATGGTATTGAGCAAGGTGTGGATT TGAACAGCACTAAGGTTCAGGACTTGAGGCAGCAGATTGCACTTCGGGAAAGGGAACTGAAGCTTAAGGCAGCTGCACAAAACAAGGAATCAGGTTCAGT TTCCGACAAGTGTATGAACATTTCCAGTAGTGTGACCAGGAAATCTAATGCAGCTTCTTCTGAAGTTGGGCAATTAGCACCAAAAGAACCAGACAGGAAA CGCATAAAACCTGACGGATCTTATTCTAAACACTTAAATTCAGATGGCCAACAAAAGATGCTTGTAGAGAAATCTAATTTACCGTCAAAAGATCAAGCGC TGGAGAACAGTAGTTTGCAGGATAGAAATATGGGTAATTGTAGCAAGAAAGAAAGACCGACAAAAAGAACAGAGTCGAGTGTAGTTAAATGGGAGAGGCA AGATAGGAGGGTGGATATTTCATCAGCAAAGCTACCTGCTTCTCACATCAATGATAATTCCAGTCAGCCTGACACGAGCAGAATGCAGATGGATCCTTGT GTGGTATTGAACCAGACCCCACTGCTTACTAATGCAAATGCTAGTACTTTATCGAAGAAGAGAAAGAGTGTTGACTTGAATCCTGTAAAGAATTGCGGAA CCCAGCCACCAGCTTGTTTGTTAAAGACATCAACTAGTGGACAGAATTTAATAAACAGCTGTGAGCACTTGCAAGGCATATCTGGTGATAAGCTGTCCTG TCAAGCATCTCTGAATTTAAACCCTTGGAATTGTCTGGGAACTGTAAATGTGGCAGAACATAACAGCATAGATATTCAGTTGTTAGTTGAAATGGAGGAA TCCTTAGACAGGGAGCTGGAAGAAGAACAAGAGCACAGACACAAATGTGAAATTGAAGAAAGAAATGCTCTTAAAGCTTATCGAAAAGCACAGAGAGCTT TGATTGAGGCTAATTCTAGATGTACAGAACTTTATCGCAAGAGGGAACTGCACTCAGCTCACTTTCGATCTCTCATTGTGAATGATTCCAGTTTGTTTTT TCCCTCCAGGCAGGATGAACATGTTGGCATTGGGATGGACCGTGAAAATAATGTATCTAGAAATGTGGATTTAATACCCTCATCAAGCGATCAGATGCAG CCTGAGTATGATGGTTGTAATCAGCCAGGGTATGATTCAGTCACTGGTGCTCCCTCAAATTCACTTTATCAGCATGTAAATGGCCATAGTTTGGGATCCG AGCCATGCAGTGAACCTGATGCTAGTACATCAGAGCCATTGCCCCGCAACAGCCTGATTGCTGCAAATGGAGTAAGCTCTCAATCCAATGATTCTAATAT TTCAGCTGGGGAAGATGAAGAGACGTTTCCATTGGACCATGAGACTGATCAACCTATCTTCAAAATTCAGCAAAGAGATCAAAATTCTGTGGGAAGGGAA AGCCACACAGATTGTCATCCAAACAAAGATTTTTATGTTGATGGCCCTCAGGATTCTTTGATTCTTGAAGCAAAATTAAGATCCAAACTATTTGCTCGTC TACCAATCAGAACCTTTTCAAAGAATGGTGGTTCATCCAACATGGAGCCTGCAGATGAACCAGGGATTGAAATTGACAACAGAAGTGAAAGAACCCAGGG AAGCAATGTCAGTATACCATTGTCAGAGACAGAAAAGGATCGAGATTATGACCTTGAAGGCAATAATAAGCCTGAAAGAAGTATATCTGAGCTTCCTGTC CAGATTCAGAACCATGAAAAGAATTTTCATTCTGCTGCTGATTCCAAGGACGATTCCACTGGAGGTCATCAGCTGACAACTTCTGTCATATCTTCACCTC TTTTAGTATTGAGGAGTGCATTTGCTCAAATGAAAGCTATGCACCCAATGACTTTGATAGAATCACAATGTAGAAAAAACCAACAAAATGATACCTGTGG CGATTTCATTGTAGAGGATGGTTTTATGGACACTGAGGAAATCCAGTGTGATAACGTGATAGCAAAGTCAAAGGAGGAGATTATAAGGGGTATGTGTGGA ACTGAAATTGGGACTTTTACCCACAATGTGGCGGTTGACCCATTTTGGCCACTATGCATGTATGAGCTTCGAGGAAAATGCAACAATGATGAATGTCCTT GGCAACATGTTAGGGACTTCTCTGATCAAAATTTGCATCCAAATCAGCATGATGATTCTGATAGTGCTGATTGTCAGGTTGGATTAACACTGCATGAACA AAAATGTAAAGGTGGAGCAAAACTTTCCAAGTGTCACAGTGTATTGAATCCACCAACTTATCTTGTTGGCTTGGATGTTTTAAAATCCGATTCATATAAA TCTGTCATTGCACGGAGAAATGGGCAATGCTGGCAAATACAGTTCAGTCTTTGCTTAGCTTTATCAAGTTTCTTTCAAAAAGATTTGCTTGCTGATCAGC TTTCTATCCGTGCTGATGATGGCCGTATCGAGGTCCATGGGAGTTGGAATAGACAGACATCATACTTTCAGAGTAGAGAGAACACAGTGAATCATCTCAA TCAAGCATTAGCCAGCAGTTTGCAGTCCCTTGAAATGGCTCTTCTTTTTCTCTGTCAGGAGGTTTACAAGCTGGAGGGTATGAAGAAGCCTCTCTCCATG CTGTCACGAGCAATTGAGGCTGATCCAACATCTGAAGCTCTGTGGATGATGTATCTGCTCATTTACTACAGCAACATTGAGTCAATTGGGAAGGATGACA TGTTCTCCTATGCGGTTAAAAACAACGAAAGATCTTATGGACTTTGGCTCATGTACATCAACAGTCGTATACATCTTGATGATCGAATGGTAGCATATAA TGCTGCTCTCACAGCGCTTTGTCGCCAGGCATCTGCTTTTGATAAGGGCAATATGTATGCTAGTGCATGCATCTTAGATTTGTTCTTACAGATGATGGAT TGTTTGTGCATGTCTGGGAATGTTGGCAAGGCTATTCAGAAAATCCAAGGACTCTTCCCTGTGGCAGCTAACTCAGATGAGCCTCACTTTCTGTTGCTCT CTGATATCCTCGCATGCTTAACAAATTCTGACAAATATATCTTCTGGGTTTGTTGTGTGTACTTAGTTATTTACAGGAAGTTACCTGATGCTATTGTACA ATGTTTTGAATGTGACAAAGAACTCCTTGCAATTGAATGGCCTTATGTTCAGTTACCAAATGAAGAGAAGCAGAGGGCTGTTAAGCTAGTTGAGATGGCA GTGGATTCTGTTGAAATGTCTGTCAACAGTGAATCACTTGAAAGTGACAAAAATGGCAGAATGGCCCAACAGTTTGCTCTCAGCCATATTAGGTGTACAC TAGTTTTTGATGGCTTAGCTTGCTGTCAGAATTTGTTGGGCAAGTATACAAAGTTGTACCCGTCCTGTGTAGAACTTGTTCTCCTGTCAGCAAGGCTTAA AAAAAATGGCTTGGGCAGTGTGAGCTTTGAAGGGTTTGAGGAAGCCATTAGTAATTGGCCAAAAGAAGTCCCTGGAATTCATTGTATCTGGAATCAGTAT ATTGAGTGTGCCCTCCAAGAAGAAGGTCCTGATTTTGCAAAAGAACTCACTGTCCGCTGGTTTAACTCCGTTTCAAAAGTTCAATATCCTCAAAATGAGA TTTTGGATGCGGTGGATGGTAATAGCTCACTTGGATCACTGGAATCAGCTTCAGCATCAAATCTAGACTTTCTGATACCCAACTCTAATCAGATGGATAT GATGTTTGGATTAATTAATCTATCTCTTGCTAAATTATTGCACAAAGACCACGTTGAAGCTCATGTTGCCATTGACAGAGCACTGAAGGCTGCACCTCCA GAGTACATCAAACATTGCTTATCAGAGCATGCTGTGTTCTTGCTAAACCATGAGCCAAAATTAAGGAAGGATGCTCCTGTCAGTGAAAAACTGAAAATTT TGAATGGTTATTTGAATGATACCCAAGCTCTCCCAGTTTGCGAACCATTATCTAGACGATTCATTGACAACATTGAGAAGCCAAAAGTTCAGCAGCTAAT CAGTAGCATATTGAGTCCGGTTTCATCTGACTTTTCTTTGGTGAATCTTGTTCTTGAAGTGTGGTATGGCCCCTCTCTTTTACCCCCAAAGTCAAACCAG CCAAAAGAATTGGTGGATTTTGTTGAAGCCATCTTAGAGATGGTGCCATCCAACTACCCAATAGCTCTTTCTGTTTGCAAGCTCTTGTGCAGAGGCTACA GCTATATTAATGTTACTTCTGACAGTGTTCTATACTGGGCGTGCTCAATCTTGGTCGATGCAATCTTTCATGCTATTCCAGTGCCACCGGAATTTGTGTG GGTTGAAGCTGCAGGTATTTTGGGTGATATTTCTGGTGTCAAGTTAATTTCTGACAGGTTTTACAAGAAAGCTTTATCTGCACATCCATTCTCTATGAAG CTATGGAGTTGCTATTATAATCTATCAAAGAGTAGAGGATATGTAAGCACTGTTATCCAAAAAGCTAGAGAGAGGGGTATTGAAGTTGGTTGA
AA sequence Show only first row Show all	>Potri.008G052500.1 pacid=42805836 polypeptide=Potri.008G052500.1.p locus=Potri.008G052500 ID=Potri.008G052500.1.v4.1 annot-version=v4.1 MASNNPSQPEFATKTREEGEVSSSSNDDQNPVCASALFADAFNTPASARTIPFHPMNKFTLSNRAGKAIFSTNPARCVDPNLQTSQPNNNKSFEKNRVPH ISANPGKCASSGANDNLVIRFSDDESGSESEDRDDKPLKTKPNTTVVNGNGRLPPILPAKSSMSLQTSRNVNSIPKKSSMSRTFNSSMTKINGVANSKGA DSSSVGQGSQVKNINSIKRNLASQEHGIEQGVDLNSTKVQDLRQQIALRERELKLKAAAQNKESGSVSDKCMNISSSVTRKSNAASSEVGQLAPKEPDRK RIKPDGSYSKHLNSDGQQKMLVEKSNLPSKDQALENSSLQDRNMGNCSKKERPTKRTESSVVKWERQDRRVDISSAKLPASHINDNSSQPDTSRMQMDPC VVLNQTPLLTNANASTLSKKRKSVDLNPVKNCGTQPPACLLKTSTSGQNLINSCEHLQGISGDKLSCQASLNLNPWNCLGTVNVAEHNSIDIQLLVEMEE SLDRELEEEQEHRHKCEIEERNALKAYRKAQRALIEANSRCTELYRKRELHSAHFRSLIVNDSSLFFPSRQDEHVGIGMDRENNVSRNVDLIPSSSDQMQ PEYDGCNQPGYDSVTGAPSNSLYQHVNGHSLGSEPCSEPDASTSEPLPRNSLIAANGVSSQSNDSNISAGEDEETFPLDHETDQPIFKIQQRDQNSVGRE SHTDCHPNKDFYVDGPQDSLILEAKLRSKLFARLPIRTFSKNGGSSNMEPADEPGIEIDNRSERTQGSNVSIPLSETEKDRDYDLEGNNKPERSISELPV QIQNHEKNFHSAADSKDDSTGGHQLTTSVISSPLLVLRSAFAQMKAMHPMTLIESQCRKNQQNDTCGDFIVEDGFMDTEEIQCDNVIAKSKEEIIRGMCG TEIGTFTHNVAVDPFWPLCMYELRGKCNNDECPWQHVRDFSDQNLHPNQHDDSDSADCQVGLTLHEQKCKGGAKLSKCHSVLNPPTYLVGLDVLKSDSYK SVIARRNGQCWQIQFSLCLALSSFFQKDLLADQLSIRADDGRIEVHGSWNRQTSYFQSRENTVNHLNQALASSLQSLEMALLFLCQEVYKLEGMKKPLSM LSRAIEADPTSEALWMMYLLIYYSNIESIGKDDMFSYAVKNNERSYGLWLMYINSRIHLDDRMVAYNAALTALCRQASAFDKGNMYASACILDLFLQMMD CLCMSGNVGKAIQKIQGLFPVAANSDEPHFLLLSDILACLTNSDKYIFWVCCVYLVIYRKLPDAIVQCFECDKELLAIEWPYVQLPNEEKQRAVKLVEMA VDSVEMSVNSESLESDKNGRMAQQFALSHIRCTLVFDGLACCQNLLGKYTKLYPSCVELVLLSARLKKNGLGSVSFEGFEEAISNWPKEVPGIHCIWNQY IECALQEEGPDFAKELTVRWFNSVSKVQYPQNEILDAVDGNSSLGSLESASASNLDFLIPNSNQMDMMFGLINLSLAKLLHKDHVEAHVAIDRALKAAPP EYIKHCLSEHAVFLLNHEPKLRKDAPVSEKLKILNGYLNDTQALPVCEPLSRRFIDNIEKPKVQQLISSILSPVSSDFSLVNLVLEVWYGPSLLPPKSNQ PKELVDFVEAILEMVPSNYPIALSVCKLLCRGYSYINVTSDSVLYWACSILVDAIFHAIPVPPEFVWVEAAGILGDISGVKLISDRFYKKALSAHPFSMK LWSCYYNLSKSRGYVSTVIQKARERGIEVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39580			unknown protein		Potri.008G052500 [exp]	0	1
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.002G001000 [exp]	1.00	0.8947
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	2.82	0.8557
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.016G128900 [exp]	3.46	0.8418
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	5.19	0.8617
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.008G048000 [exp]	5.29	0.8372
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	5.47	0.8528	Pt-ABA3.1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	8.00	0.8368
					Potri.006G182801 [exp]	11.53	0.8092
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	12.00	0.8208
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	12.64	0.8243

Compare expression of checked genes

Potri.008G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.