Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12590 1518 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207900 [exp] 2012 / 0 AT3G12590 1504 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005160 [exp] 1665 / 0 AT3G12590 1536 / 0.0 unknown protein Lus10001698 [exp] 1075 / 0 AT3G12590 973 / 0.0 unknown protein Lus10001699 [exp] 440 / 3e-144 AT3G12590 453 / 4e-150 unknown protein Lus10001700 [exp] 59 / 3e-10 AT3G12590 47 / 5e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G052700.1 pacid=42806556 polypeptide=Potri.008G052700.1.p locus=Potri.008G052700 ID=Potri.008G052700.1.v4.1 annot-version=v4.1 ATGTCTTCAACGTTCAGTTCCTCACGAAATAGTCCTGGTAGCGCCAGGCTACAGCTCCAGTTTGGTGCTGTTAGATCTTCTTCTTTAAAGAAGCCGCCCG AGCCGCTCCGCCGTGCCGTGGCTGATTGTTTATCATCCGCTGCTGTCGCCACCTTTCACCATGGAATTTCACCTGCCACCTCGACTGATGCTTCTAGAAC GCTTCTTGATTATCTGGCAGCCCCTGCAACTACTGATCTGGCATATGGTGTCATTCTGGAACATACAATTGCAGAGAGGGAGCGCAGTCCAGCAGTAGTT GGAAGATGTGTGACACATTTGAAGCGTTACCTTCTACGATGTATACCTAGTGAGGAGACATTATCTCAGATTGATCGGTTTTGCCTGAGCATAATTGCTG AGTGTGATATCAGCTTAAAACGAACATCATCAACTTGGTCTGGATCTCTGAATCAGCAATCTGTTTCATCAACAGCACCTGCAAATTACTCGCCTTCCCC ACCTGTATATATTTATGCTTCTGAAGCTCTTGTAAAGTCATTAAATTATGTGCGTTCCCTTGTAGCCCATCATATTCCAAAGCGACCTTTCCAACCAGCA GCTTTTACTGTAGCTCCCTCTGTGTCTAGACAGTCACTTCCAACTCAGCCATCTTTGTTTAGTAGATCTTTTAATTACCAATTAAGCCCTTCAAGTGGCG CAGAATCTTCAGAGAAGAATGACCCTACTACTTTACCTGCTTCAAACTTATCAAATGTTGAAAATGATGAGGTGGCCGAGGATCTTGATTACATTGCAGA TGATGTTTTGAAGTGGCGTTGGGTTGGGCGACCATTTCTATCAACTGAGAGTGATCGTCCTGTGGATCTCCATGATGTGAGTGTATGCAAATTCCTAGAA TTAGGTGCTGCAGCTCTACTTGTAGGAGACATGGAAGATAAAACGAAGGGCCAGCCTTGGAAATATTTTGGAACAGCCGATTTGCCTTACCTTGAGCAAC TGCTGCAGCCTTCATCAGTCACAACAATTACCAATTCAGCCTCAGCTCGTCGCCACTTGAGAACAATAACATCATCTAAGCGGAGTAAAGCAGGACCTCA CCAAATCTGGGAGGATTCTCCTGCGAGCACGTTTCGCCCACGTGCGCGACAGCTCTTCCAGTATCGTCACTACAGTGGACAGCAACCTTTGCGATTAAAC CCTGCTGAGGTATGCGAGGTTATTGCTGCAGTTAGCTCAGAGACATATTCTGCTAGTGCCAATCATTTGACTGTATCTAGATTAAATAATAACAGCGGAA AGCCATCAATGGATGTGGCTGTGAGTGTTCTTATTAAACTTGTCATTGACATGTATGTTATGGACTCCGGGACAGCTGCTCCTCTCGCTCTGTCCATGCT TGAGGAAATGCTTAATTCTTCAAAAGCTGCTTGTAGGGTCCGTGCCTTTGATTTAATTCTGAACCTCGGGGTTCATGCTCATTTGTTGGAACCTGTGTTG ATCAATGATGCTTCTACCATTGAAGAAGAGTATTCACAAGAATCATGTTCTGACTGTGAAGAACAACTTCCAACACAGGGGAACCAAAAGGCAGATTCTG TTAATAAGTTGGGAACTTCATCAGCAATTAATAACTTTGAATCGTGGATTTTAAATATTTTATATGAGATACTTCTTCTTCTTGTCCAGACAGAGGAGAA GGAAGAATCTGTTTGGGCTTCTGCTTTAAGCTGTTTACTTTATTTTGTCTGTGATAGAGGCAAAATCTTGAGAAACCGATTAGAAGGCCTTGACATAAGG GTGATTAAAGCCCTAATAGAGACTAGCAGAAAGAATTCTTGGGCAGAATTGGTTCATAGTAAGCTCGTTTGCATGTTAACGAATATGTTTTATCAAGTTT CTGATGGGTCTATGATGACTGTCGCAATGAACCCAGTGTTTCTCATAGACGAGCTTGACCTGATTGGGGGAATTGAATTTATTTTCCATGAGTATTCTCT TGCTAACTTAAGAGAAGAGAGGAGAAATCTGTACTTGATTCTTTTTGACTATGTGTTGCATCAAATAAATGAAGCATGCGTAGCAGCTGGGGAATCTGAA TTTAGTGATGATGAGATTCAGTCTATTGCAACTCTCCTCACTCTTGCGAATGCACCTGAAGCCTTTTACATTTCTGTTAAGCTGGGTTTGGAAGGCATTG GGGAGCTTCTGAGAAGATCAATTTCTGGTGCACTATCTAGATATCCCAACAATGAACGACTCAATATGCTCTTGGAGAATGTAACAGAGAAATTTAATGC AATAATTAGTTCCTTTACTCATTTGGACAAAGAGTTCTCTCATCTGATTGAAACAACCCAATCTTACAAGTTTCTGGAAAGTGTAGAGAGTGCAGTTCCA AGAAATGGTGTCGGCGTGAAAGCAAAACTGTCATGGGCCACTTTGCATTCTCTTCTTCACTCAGAAAGGATTGCTTACCGTCAGAATGGCTATACCTGGT TGGGTGATTTGCTTATTGCCGAGATTACTGAGGGAAGGGATGTGAATGTATGGTCAAATGTTAAAGAATTGCAGCGAAAAATTGCCTATGCTGGTGTACA TGATTCTTCTGTTTCTTCAGATGTTCCTTTATCAATTTGGCTTTTGTGCGGGCTTTTGAAGTCTAAACATAATATCATCAGATGGGGCTTCTTGTTTGTT CTAGAGAGACTTCTCATGCGATGCAAATTTTTGTTAGACAAGAATGAAATGCAACACCCAAGGAGCAGTAATGCCAGTCATGAGCATGCAGATAGCAGAC TCGAGAAAGCAAATGCTGTGATAGATATTATGAGCAGTGCTCTATCCTTAGTGGCTCAAATAAATGAAACAGATCGTATCAACATTTTGAAGATGTGTGA CATATTGTTCTCTCAATTGTGCCTGAAAGTTCTCCCTGCAACTGCAATCCCAAATGGTGAAGGAATGCAAAAAAGTAAAGTTTGTGGTGGAGCGGATGAA AATAAGAAAAATGATACAAGTGATCGCACCTCTCAACTAAATGACTTCCACTGGAATGAATTCTTGGAAGAAGCTGATAGCAGATCCAGATCTAGCTACA GCATCAATAGTTCTCTGATATGCAAGACAGCATCAATGGCAGCAATGCTTCTCCAAGGACAGGCTATTGTTCCTATGCAATTAGTTGCACGTGTTCCTGC TGCATTGTTTTATTGGCCACTTATTCAACTAGCTGGTGCAGCAACAGACAATATTGCTTTGGGGGTTGCTGTTGTAAGCAAAGGAAGAGGAAATCTTCCT GGTGCAGCATCGGATATCAGGGCAACTCTTCTATTGCTTCTAATCGGTAAATGCACAGCAGATCCTTCTGCTTTCCAGGAAGTTGGCGGAGAAGAGTTTT TTAGGGAACTTCTAGATGATACAGATTCAAGGGTAGCGTATTACTCTTCAGCTTTTCTTTTAAAGAGAATGATGACAGAAAAACCTGATGAGTACAAGCA CATGCTGCAGAATCTCATCTTTAAAGCACAGCAGAGCAACAATGAGAAGCTGTTGGAAAATCCATACCTTCAGGTGCGCGGCCTGCTTCAACTCTCAAAT GATGGCTTGTAA
AA sequence Show only first row Show all	>Potri.008G052700.1 pacid=42806556 polypeptide=Potri.008G052700.1.p locus=Potri.008G052700 ID=Potri.008G052700.1.v4.1 annot-version=v4.1 MSSTFSSSRNSPGSARLQLQFGAVRSSSLKKPPEPLRRAVADCLSSAAVATFHHGISPATSTDASRTLLDYLAAPATTDLAYGVILEHTIAERERSPAVV GRCVTHLKRYLLRCIPSEETLSQIDRFCLSIIAECDISLKRTSSTWSGSLNQQSVSSTAPANYSPSPPVYIYASEALVKSLNYVRSLVAHHIPKRPFQPA AFTVAPSVSRQSLPTQPSLFSRSFNYQLSPSSGAESSEKNDPTTLPASNLSNVENDEVAEDLDYIADDVLKWRWVGRPFLSTESDRPVDLHDVSVCKFLE LGAAALLVGDMEDKTKGQPWKYFGTADLPYLEQLLQPSSVTTITNSASARRHLRTITSSKRSKAGPHQIWEDSPASTFRPRARQLFQYRHYSGQQPLRLN PAEVCEVIAAVSSETYSASANHLTVSRLNNNSGKPSMDVAVSVLIKLVIDMYVMDSGTAAPLALSMLEEMLNSSKAACRVRAFDLILNLGVHAHLLEPVL INDASTIEEEYSQESCSDCEEQLPTQGNQKADSVNKLGTSSAINNFESWILNILYEILLLLVQTEEKEESVWASALSCLLYFVCDRGKILRNRLEGLDIR VIKALIETSRKNSWAELVHSKLVCMLTNMFYQVSDGSMMTVAMNPVFLIDELDLIGGIEFIFHEYSLANLREERRNLYLILFDYVLHQINEACVAAGESE FSDDEIQSIATLLTLANAPEAFYISVKLGLEGIGELLRRSISGALSRYPNNERLNMLLENVTEKFNAIISSFTHLDKEFSHLIETTQSYKFLESVESAVP RNGVGVKAKLSWATLHSLLHSERIAYRQNGYTWLGDLLIAEITEGRDVNVWSNVKELQRKIAYAGVHDSSVSSDVPLSIWLLCGLLKSKHNIIRWGFLFV LERLLMRCKFLLDKNEMQHPRSSNASHEHADSRLEKANAVIDIMSSALSLVAQINETDRINILKMCDILFSQLCLKVLPATAIPNGEGMQKSKVCGGADE NKKNDTSDRTSQLNDFHWNEFLEEADSRSRSSYSINSSLICKTASMAAMLLQGQAIVPMQLVARVPAALFYWPLIQLAGAATDNIALGVAVVSKGRGNLP GAASDIRATLLLLLIGKCTADPSAFQEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPDEYKHMLQNLIFKAQQSNNEKLLENPYLQVRGLLQLSN DGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12590			unknown protein		Potri.008G052700 [exp]	0	1
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	2.00	0.8744
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	2.00	0.8929
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	2.44	0.8692
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	2.64	0.8541
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	6.32	0.8679
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	6.63	0.8213
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	7.48	0.8519
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	8.06	0.8665
					Potri.009G005300 [exp]	8.24	0.8252
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	9.16	0.8371

Compare expression of checked genes

Potri.008G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.