Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39570 574 / 0 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 415 / 1e-143 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT4G22780 67 / 9e-12 ACR7 ACT domain repeat 7 (.1) AT3G01990 62 / 4e-10 ACR6 ACT domain repeat 6 (.1) AT1G76990 60 / 1e-09 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G69040 44 / 0.0001 ACR4 ACT domain repeat 4 (.1.2) AT1G16880 42 / 0.0003 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT2G03730 42 / 0.0005 ACR5 ACT domain repeat 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207700 [exp] 765 / 0 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G237100 [exp] 538 / 0 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G228500 [exp] 440 / 2e-153 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 416 / 5e-144 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 407 / 2e-140 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 401 / 5e-138 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.003G116600 [exp] 74 / 4e-14 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 69 / 2e-12 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.002G074800 [exp] 69 / 2e-12 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005157 [exp] 609 / 0 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 597 / 0 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10004948 [exp] 494 / 2e-174 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10017470 [exp] 426 / 1e-147 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 419 / 7e-145 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 416 / 7e-144 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10005447 [exp] 395 / 8e-136 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 219 / 3e-68 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10041543 [exp] 63 / 2e-10 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 62 / 4e-10 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.008G052900.2 pacid=42808417 polypeptide=Potri.008G052900.2.p locus=Potri.008G052900 ID=Potri.008G052900.2.v4.1 annot-version=v4.1 ATGGGGATTCCAGCTGATGATGTCGTTTTGATCCAGCAAGGTAGCGGTTCCAATGACCCCACCGTCGTCACCGTCAATTGCCCTGACAAGTCTGGTCTTG GATGCGATCTCTGCAGAATAATCCTCGAGTTTGGGCTACACATTACTCGCGCAGATTTTCAAACGGATGGAAAGTGGTGTTACATAGTATTCTGGGTGGT TCAACGTTCAAACTCGCTAAGACTTGATTGGGATAGCTTGAAAAACCGGCTCTTGATTGTGTCTCCTCCATGTCTGGCTCCACTTTATTACGATCACAAA TTGAATGGTTCCACGGCTGCTCCTTCTGTATATTTGTTGAAGTTTTGTTGTGTTGACCGGAAAGGATTATTGCATGATATCACTGAAGTTCTAACTGAGC TTGAATTTACAATTCAAAGACTAAAAGTGATGACAACACCAGACGAGAAAGTTGTGGACTTGTTCTTCATTACAGATGGCAGGGAGCTCTTACACACGAA AGAAAGGCGAGATAACACATGTGGATATTTGTGTGATGTATTCAAAGAGTATTGTATCAGCTGTGAACTTCAGTTGGCCGGTCCTGAATGTGAAAATCAG CGGACTTTCTCTTCCCTCCCAATGGCAGTTGCAGAAGAATTGTTTAGCTGTGAGCTGTCAGAAAAGGAATCCTGTACGCAAGCACTTGGGACAGCTACAA CACCACCAAAGAAGGCCATCGTTACAGTGGATAATCTTTTGAGCCCAGCTCATACATTGCTTCAAATACAATGTGTTGATCAAAAAGGTCTCTTTTATGA CATCTTGAGAACTTCAAAGGACTTAAATATCCAGGTAGCTTATGGTAGATTCTCATCTAGCATAAAAGGATACCATAACATGGATCTATTAATTCGGCAA ACAGATGGGAAGAAGATTGTGGATCCCGAACTTCTGGCCAATACTTGTTCTCGATTGAAGGAGGAAATGCTTCATCCATTACGAGTGATCATCACCAACA GAGGCCCAGATACTGAACTCTTAGTAGCTAACCCTGTTGAGTTATGTGGCAAGGGAAGACCACGTGTATTTTATGATGTTACTTTGACTCTGAAAAAGTT GGGAATATGCATTTTTTCGGCCGAAATTGGAAGGCACTCAACTCAGGATCGCCAGTGGGAAGTCTACAGGTTCCTCTTGGATGAAAATTGCGACGTTCCG TTAGCAAGTAGTCAAGCCAGAAATCAAATAGTGGACAGAATTAGAAGAACATTAATGGGCTGGTAG
AA sequence Show only first row Show all	>Potri.008G052900.2 pacid=42808417 polypeptide=Potri.008G052900.2.p locus=Potri.008G052900 ID=Potri.008G052900.2.v4.1 annot-version=v4.1 MGIPADDVVLIQQGSGSNDPTVVTVNCPDKSGLGCDLCRIILEFGLHITRADFQTDGKWCYIVFWVVQRSNSLRLDWDSLKNRLLIVSPPCLAPLYYDHK LNGSTAAPSVYLLKFCCVDRKGLLHDITEVLTELEFTIQRLKVMTTPDEKVVDLFFITDGRELLHTKERRDNTCGYLCDVFKEYCISCELQLAGPECENQ RTFSSLPMAVAEELFSCELSEKESCTQALGTATTPPKKAIVTVDNLLSPAHTLLQIQCVDQKGLFYDILRTSKDLNIQVAYGRFSSSIKGYHNMDLLIRQ TDGKKIVDPELLANTCSRLKEEMLHPLRVIITNRGPDTELLVANPVELCGKGRPRVFYDVTLTLKKLGICIFSAEIGRHSTQDRQWEVYRFLLDENCDVP LASSQARNQIVDRIRRTLMGW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.008G052900 [exp]	0	1
AT3G20420		RTL2, ATRTL2	RNASEIII-LIKE 2, RNAse THREE-l...		Potri.011G086700 [exp]	11.31	0.6531
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.019G091600 [exp]	12.40	0.7586
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.012G047400 [exp]	16.61	0.6728
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G022600 [exp]	23.91	0.6886
AT3G05270			Plant protein of unknown funct...		Potri.002G083400 [exp]	63.87	0.6238
					Potri.010G023150 [exp]	74.29	0.5566
AT2G46540			unknown protein		Potri.014G100250 [exp]	166.73	0.5777
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.004G018100 [exp]	167.40	0.5720	TOM1.2
AT1G55930			CBS domain-containing protein ...		Potri.001G362100 [exp]	210.95	0.5683
AT3G52130			Bifunctional inhibitor/lipid-t...		Potri.001G271000 [exp]	216.43	0.5634

Compare expression of checked genes

Potri.008G052900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.