Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UXS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28760 624 / 0 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 620 / 0 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 618 / 0 UXS5 UDP-XYL synthase 5 (.1.2) AT2G47650 480 / 9e-170 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 478 / 6e-169 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 473 / 2e-167 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT1G08200 127 / 3e-33 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 125 / 2e-32 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G53500 112 / 3e-27 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT5G28840 109 / 7e-27 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207200 [exp] 696 / 0 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 625 / 0 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.002G204400 [exp] 481 / 4e-170 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 480 / 5e-170 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 478 / 2e-169 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.016G080500 [exp] 478 / 3e-169 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.004G189900 [exp] 120 / 7e-31 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.009G150600 [exp] 120 / 1e-30 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.005G053000 [exp] 114 / 7e-29 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001707 [exp] 665 / 0 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005155 [exp] 663 / 0 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10040847 [exp] 659 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005450 [exp] 638 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005900 [exp] 540 / 0 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001705 [exp] 506 / 0 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10003605 [exp] 491 / 9e-174 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 485 / 8e-172 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 469 / 1e-165 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10006510 [exp] 466 / 1e-164 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.008G053100.7 pacid=42808757 polypeptide=Potri.008G053100.7.p locus=Potri.008G053100 ID=Potri.008G053100.7.v4.1 annot-version=v4.1 ATGGCCAAGGAGGCTTCGAATGGAAATCACAACTCTGCAACAAAAGCTCCTCCAACTCCATCTCCTTTAAGATTTTCCAAGTACTTCCAGTCCAATATGA GGATTTTGGTAACTGGAGGAGCTGGATTTATTGGTTCACACCTGGTGGACAGGTTGATGGAAAATGAAAAGAATGAGGTTATTGTGGCGGATAACTATTT CACTGGCTCTAAGGACAACCTAAAGAAATGGATCGGTCATCCAAGATTTGAGCTCATTCGTCACGATGTCACTGAGCCATTGCTAGTTGAGGTCGATCAA ATTTACCACCTTGCTTGCCCTGCTTCCCCAATCTTCTACAAATATAATCCTGTAAAGACCATAAAGACAAACGTGATTGGGACATTGAATATGTTGGGAC TTGCCAAGCGAGTTGGAGCAAGGATTTTGCTTACATCAACTTCCGAGGTCTATGGAGATCCACTTGTACATCCTCAGGATGAGAGCTACTGGGGAAATGT CAACCCAATTGGAGTCAGAAGCTGCTATGATGAAGGAAAGAGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGGATAGAGATACGAATT GCCAGAATTTTCAACACTTATGGACCCAGAATGAACATTGATGATGGTCGTGTTGTCAGCAATTTCATAGCCCAAGCAATCCGGAACGAGCCTTTGACTG TTCAAGCACCTGGAACCCAAACCCGGAGTTTCTGTTACGTGTCTGACATGGTTGATGGCCTCATCCGACTTATGGAAGGAGAGAACACTGGGCCTATTAA TATTGGAAATCCAGGTGAATTCACCATGATGGAGCTTGCGGAGACTGTTAAGGAGCTTATCAACCCTGAAGTAGAGATCATAGGAGTGGAGAACACACCA GATGATCCTCGCCAGAGGAAGCCAGACATCACAAAAGCAAAAGAATTGTTAGGCTGGGAACCGAAGATTAAGCTGCGTGATGGTCTTCCTCTCATGGAGG AGGATTTCCGACGGAGGCTTGAAGTTCCCAGAGAGAACTGA
AA sequence Show only first row Show all	>Potri.008G053100.7 pacid=42808757 polypeptide=Potri.008G053100.7.p locus=Potri.008G053100 ID=Potri.008G053100.7.v4.1 annot-version=v4.1 MAKEASNGNHNSATKAPPTPSPLRFSKYFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQ IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI ARIFNTYGPRMNIDDGRVVSNFIAQAIRNEPLTVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMMELAETVKELINPEVEIIGVENTP DDPRQRKPDITKAKELLGWEPKIKLRDGLPLMEEDFRRRLEVPREN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.008G053100 [exp]	0	1	UXS1.2
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	2.00	0.9597
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.016G107300 [exp]	4.89	0.9492
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	4.89	0.9556
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	7.93	0.9245
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	9.48	0.9354
AT4G23690			Disease resistance-responsive ...		Potri.001G097001 [exp]	9.79	0.9263
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	13.41	0.9220	PtrAUX8
AT5G54240			Protein of unknown function (D...		Potri.001G408001 [exp]	15.55	0.9197
AT4G10950			SGNH hydrolase-type esterase s...		Potri.009G157800 [exp]	15.62	0.8550
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.007G072750 [exp]	17.74	0.9142

Compare expression of checked genes

Potri.008G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.