Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55390 238 / 6e-81 Uncharacterised protein family (UPF0497) (.1) AT1G17200 63 / 3e-12 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT2G36330 53 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT2G38480 52 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT1G79780 52 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT5G40300 50 / 2e-07 Uncharacterised protein family (UPF0497) (.1) AT5G62820 48 / 9e-07 Uncharacterised protein family (UPF0497) (.1) AT4G11655 45 / 4e-06 Uncharacterised protein family (UPF0497) (.1) AT3G16300 45 / 1e-05 Uncharacterised protein family (UPF0497) (.1) AT1G03700 44 / 1e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207000 [exp] 352 / 5e-126 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 62 / 5e-12 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 56 / 7e-10 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.001G436400 [exp] 56 / 2e-09 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.001G102600 [exp] 51 / 4e-08 AT4G11655 105 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.003G050400 [exp] 48 / 5e-07 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) Potri.012G079800 [exp] 46 / 4e-06 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 44 / 1e-05 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 39 / 0.001 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005154 [exp] 253 / 1e-86 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10001709 [exp] 242 / 4e-82 AT3G55390 231 / 1e-77 Uncharacterised protein family (UPF0497) (.1) Lus10026196 [exp] 57 / 3e-10 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10001266 [exp] 57 / 3e-10 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1) Lus10012216 [exp] 57 / 6e-10 AT2G38480 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 56 / 8e-10 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10031303 [exp] 47 / 1e-06 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.008G053500.1 pacid=42805924 polypeptide=Potri.008G053500.1.p locus=Potri.008G053500 ID=Potri.008G053500.1.v4.1 annot-version=v4.1 ATGCGGTTTCCACAGCCCCACCGTAACGGCGGTGAGACCCAGCAACACTTCCACTCCACCATCTCCTTACAGAAGCTGAAACGCTTCAACTCACTCATTC TTGTTTTTCGATTCTCTGCCTTTTGTTTCTCTCTTGCCTCTGCTGTTTTCATGCTCACTAACTCTAGAGGATCTGATTCCTTTCATTGGTACAATTTTGA CGCTTTCAGATACGTTTTTGCTGCGAATGCAATCGTCGCCGTTTACTCTCTATTCGAAATGACTGCCGCCGTTTGGGAAATTTCGAGAAACGCGACGCTC TTCCCTGAAGTTTGCCAAGTCTGGTTCGATTTCGGCCATGATCAGGTGTTTGCGTACCTGTTATTGTCAGCGAACTCAACCGGCACGGAAATGGCTAGGA CAATGAAAGACGCGTGTACTGATAACAAGCCGTTCTGTGTGCAGTCAGATATTGCGATTGCTCTGGGTTTTGTCGGGTTTTTGTTTTTGGGTGTTTCGTC TTTGTTTTCGGGTTTTCGGGTGGTTTGTTTTATAATCAACGGCTCTCGTTTTTATGTTTAG
AA sequence Show only first row Show all	>Potri.008G053500.1 pacid=42805924 polypeptide=Potri.008G053500.1.p locus=Potri.008G053500 ID=Potri.008G053500.1.v4.1 annot-version=v4.1 MRFPQPHRNGGETQQHFHSTISLQKLKRFNSLILVFRFSAFCFSLASAVFMLTNSRGSDSFHWYNFDAFRYVFAANAIVAVYSLFEMTAAVWEISRNATL FPEVCQVWFDFGHDQVFAYLLLSANSTGTEMARTMKDACTDNKPFCVQSDIAIALGFVGFLFLGVSSLFSGFRVVCFIINGSRFYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55390			Uncharacterised protein family...		Potri.008G053500 [exp]	0	1
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	4.35	0.6317
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.015G068300 [exp]	5.65	0.6049	VFPP2.2
AT2G24590		RSZ22a, At-RSZ2...	RS-containing zinc finger prot...		Potri.006G272400 [exp]	7.61	0.6247	SRZ.3
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	9.21	0.5997
AT5G11500			unknown protein		Potri.006G241900 [exp]	14.42	0.5967
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.014G024200 [exp]	16.00	0.5485
AT1G25260			Ribosomal protein L10 family p...		Potri.001G460100 [exp]	22.64	0.6074
AT5G54920			unknown protein		Potri.011G138600 [exp]	23.74	0.5996
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	29.29	0.5696
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	39.94	0.5680

Compare expression of checked genes

Potri.008G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.