Plant FIBer expression Database

Potri.008G054100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12570 721 / 0 FYD FYD (.1.2.3.4)
AT2G37570 674 / 0 SLT1 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
AT5G02480 583 / 0 HSP20-like chaperones superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G206400
[exp]
919 / 0 AT3G12570 716 / 0.0 FYD (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023420
[exp]
779 / 0 AT3G12570 730 / 0.0 FYD (.1.2.3.4)
Lus10040301
[exp]
762 / 0 AT3G12570 731 / 0.0 FYD (.1.2.3.4)
Lus10024406
[exp]
639 / 0 AT2G37570 786 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
Lus10025337
[exp]
639 / 0 AT2G37570 789 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.008G054100.1 pacid=42806280 polypeptide=Potri.008G054100.1.p locus=Potri.008G054100 ID=Potri.008G054100.1.v4.1 annot-version=v4.1
ATGGGGGAAGCTCTTCTAACGACTTTATCTATGGAAAATTATCACCCATCTACACTTCTTTCTATGGACTCGGGCTCTCTTACACATGATGATTTGGAGA
GGGAGATGAATCGGTCTGTCATTCTTTCAAGACCGCCTGATATCAATCTCCCGTTGTCGTCTGAGCCTAGTCCACCTCCTCCCCTTACTTGGAATGATCC
ATGCGACATCTTGGATGTAGGTCTTGGGCCTCAGATTTATGAGGCTGAGACAATTGTCAGTATTCCAAAAGTTGTGAAGAAATGCACAAAGCGCCTGGAT
AGCATTTGGGGTGCCTGGCTCTTCTTTAGCTTCTATTTCAAGCCTGTTTTGAATGAGAAGTCGAAATGCAAAATAATCAGGGATAGTAATGGTGTTTCTG
GGTTTGAGAAATCAGATTTGCAGCTAGATGCTTTTTTAGTTCAGCATGACATGGAGAACATGTACATGTGGGTGTTCAAGGAAAGGCCTGAAAATGCTTT
GGGTAAAATGCAACTGAGGAGCTACATGAATGGGCATTCTCGCCAAGGGGAGCCCTCATTTCCATTCAGTGTTGACAGGGGCTTTGTCCGGTCTCATAGA
ATGCAGAGGAAGCATTATAGGGGTCTCTCCAACCCTCAGTGCGTTCATGGTATTGAAGTTGTTCGATCACCCAGTCTCATGAATCTTGACGATGAAGAGC
GGAAGAGGTGGGTGGAGCTTACAGGCCGAGACATCAATTTCTCCATTCCTCCAGAGGCAAGTGATTTTGGCTCATGGAGGAACCTTCCAAGCACAGAATT
TGAGCTTGAGCGGCCCCCACCTGCACTAAAGAGTAATGGAAATGCCCACCCAAGAAAGTTGCTTAATGGTACTGGTTTGAACCTGTCTACTCAGTCCTCA
GACCATAGCAATGGAGAAGGCATTGACTTGTCTCCTATGAGCAACAAGCGGAAGCATGGCAGTGATGATGAATTTTTGCATTCTGTTGATATGAATATCC
ACCCAGTTGAGCGAACATGGTTAAACGAGTTCAGTGGGGTAATGAAGAATGTAAATGGGCCTGTTACAGCAGCAAAAACAATATACGAGGATGATAAAGC
TTTTTTAGTCATCGTCAGCTTGCCCTTTGCAGATCTTCAAAGGGTGAAAGTTACTTGGAGGAATACTAAATCGCATGGTATTGTTAAGATATCTTGTATA
AGTACAGCATGCATGCCATTTATTAAGCGGCATGATAGGACATTTAAGCTAACAGATCCAACTCCAGAGCACTGCCCTCCTGGGGAATTCATTAGGGAAA
TTCCCCTCCCAAACCTCATTCCAGAAGATGCGAAGCTGGAAGCATACCGTGATGAGACCGGTACAGTGCTTGAAATTATTGTGCCCAAGCATCGTGTAGG
ACCAGAAGAACATGAAGTTCGTGTATGCCTTCGCCCCTCTCCTTGGAGTGAATGA
AA sequence
>Potri.008G054100.1 pacid=42806280 polypeptide=Potri.008G054100.1.p locus=Potri.008G054100 ID=Potri.008G054100.1.v4.1 annot-version=v4.1
MGEALLTTLSMENYHPSTLLSMDSGSLTHDDLEREMNRSVILSRPPDINLPLSSEPSPPPPLTWNDPCDILDVGLGPQIYEAETIVSIPKVVKKCTKRLD
SIWGAWLFFSFYFKPVLNEKSKCKIIRDSNGVSGFEKSDLQLDAFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGEPSFPFSVDRGFVRSHR
MQRKHYRGLSNPQCVHGIEVVRSPSLMNLDDEERKRWVELTGRDINFSIPPEASDFGSWRNLPSTEFELERPPPALKSNGNAHPRKLLNGTGLNLSTQSS
DHSNGEGIDLSPMSNKRKHGSDDEFLHSVDMNIHPVERTWLNEFSGVMKNVNGPVTAAKTIYEDDKAFLVIVSLPFADLQRVKVTWRNTKSHGIVKISCI
STACMPFIKRHDRTFKLTDPTPEHCPPGEFIREIPLPNLIPEDAKLEAYRDETGTVLEIIVPKHRVGPEEHEVRVCLRPSPWSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12570 FYD FYD (.1.2.3.4) Potri.008G054100
[exp]
0 1
AT3G12570 FYD FYD (.1.2.3.4) Potri.010G206400
[exp]
4.00 0.8230
AT5G10870 ATCM2 chorismate mutase 2 (.1) Potri.018G019250
[exp]
9.64 0.7812
AT4G24200 Transcription elongation facto... Potri.005G241400
[exp]
12.24 0.8240
AT3G10260 Reticulon family protein (.1.2... Potri.002G055600
[exp]
14.14 0.8152
AT4G33520 AtHMAC6, HMA6, ... Arabidopsis thaliana heavy met... Potri.001G205400
[exp]
14.79 0.8238
AT2G36800 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5,... Potri.012G048700
[exp]
16.58 0.8218 Pt-GT4.1
AT4G13510 ATAMT1;1, AMT1;... ARABIDOPSIS THALIANA AMMONIUM ... Potri.010G063500
[exp]
17.29 0.7899 Pt-AMT1.4,1
AT1G01360 PYL9, RCAR1 PYRABACTIN RESISTANCE 1-LIKE 9... Potri.014G097100
[exp]
18.00 0.7917
Potri.016G089400
[exp]
20.49 0.7908
AT4G13980 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTO... Potri.017G059600
[exp]
23.45 0.8045 Pt-HSFA5.2

Potri.008G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.