Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 91 / 9e-21 unknown protein AT2G39560 50 / 5e-07 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206100 [exp] 426 / 4e-151 AT5G59350 111 / 1e-28 unknown protein Potri.009G029300 [exp] 202 / 3e-63 AT5G59350 161 / 1e-47 unknown protein Potri.001G238300 [exp] 192 / 2e-59 AT5G59350 146 / 1e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040302 [exp] 186 / 1e-57 AT5G59350 117 / 3e-31 unknown protein Lus10023421 [exp] 186 / 2e-57 AT5G59350 115 / 2e-30 unknown protein Lus10005456 [exp] 104 / 4e-27 AT5G59350 92 / 7e-23 unknown protein Lus10016568 [exp] 82 / 1e-17 AT5G59350 166 / 1e-49 unknown protein Lus10040839 [exp] 80 / 5e-17 AT5G59350 160 / 2e-47 unknown protein Lus10004955 [exp] 66 / 1e-12 AT5G59350 147 / 2e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G054400.1 pacid=42807430 polypeptide=Potri.008G054400.1.p locus=Potri.008G054400 ID=Potri.008G054400.1.v4.1 annot-version=v4.1 ATGAAATCTTTGAGTAGCGTAGGACTTGGTTTGAGTATAGTTTTTGGTTGCCTTTTATTGGCCCTTGTTGCTGAGCTTTACTACTTGTTATGGTGGAAGA AAAGGTTTGCTAACAAAGAGATTGGAGATGATTACAGCAGCCCAGCGAGAGAGCTCTTCTTTATGTTCTGTTTAAGAAAGCCATCTTCTTTAAGGCACAA TCAAGAACTATGTTCATCAGTGAGAATAACAGATGCACTTGTCCAACACGAGCAAGAATCCCAGCTCAATATTAATACAAGCAAAGATATATTGCTCCGG CCCTGGAGTGATGATAATGTGGAGACAGAGCTCATGAGGCTGCATAGTCTCTCAGGTCCACCAAGATTTCTCTTTACAATTGTTGAAGAAACAAAGGAGG ACTTAGAGTCTGAAGATGGCAGGTCTAGAGGTGATCCTAAGAGTGCGAAAGGATCAAGAAGTAGAAGCTTAAGTGATTTGCTTCGTACTGTGGAGACTCC ATATCTAACCCCTCTTTCTTCTCCACCATTTTTCACACCTCCTCTTACTCCTAGCTATAATCAGATTGGATTCAATCATCTCTTTGAATCGTCAAAAGAT GCAGAGTTCAATAAGATAAGATCATCACCACCTCCAAAATTCAAGTTCTTACAGGATGCGGATGAGAAACTACATAGAAGGAAATTGATGCAAGAAGCAG GGGAGAAGGTCCAAAGGCATGATGTTTTTGCTCAGGATCATACCAAAATACCTGCTAGTTCAAATTCACACAAAGATGAGGATGATGGGCCTTTTATCAC CATCATTATTGACAGGAACAAAGAAAGAGAGCTTAATGAACAAAATCATCAACTACCAGACTACCAGTCAAGCACTTCCCAGGTACTTCCTCTTGCTACT TCACCTTCAACATCAAAATCAGCAGCCAAGAAAAGTTCCTTCTTTCATTAG
AA sequence Show only first row Show all	>Potri.008G054400.1 pacid=42807430 polypeptide=Potri.008G054400.1.p locus=Potri.008G054400 ID=Potri.008G054400.1.v4.1 annot-version=v4.1 MKSLSSVGLGLSIVFGCLLLALVAELYYLLWWKKRFANKEIGDDYSSPARELFFMFCLRKPSSLRHNQELCSSVRITDALVQHEQESQLNINTSKDILLR PWSDDNVETELMRLHSLSGPPRFLFTIVEETKEDLESEDGRSRGDPKSAKGSRSRSLSDLLRTVETPYLTPLSSPPFFTPPLTPSYNQIGFNHLFESSKD AEFNKIRSSPPPKFKFLQDADEKLHRRKLMQEAGEKVQRHDVFAQDHTKIPASSNSHKDEDDGPFITIIIDRNKERELNEQNHQLPDYQSSTSQVLPLAT SPSTSKSAAKKSSFFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59350			unknown protein		Potri.008G054400 [exp]	0	1
AT2G31930			unknown protein		Potri.001G232200 [exp]	2.44	0.9208
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.015G033600 [exp]	3.87	0.8956	MYB.38,MYB090
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	4.89	0.8903
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.018G068700 [exp]	5.00	0.8902
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.002G049400 [exp]	5.29	0.8852
AT1G08760			Plant protein of unknown funct...		Potri.017G026200 [exp]	5.47	0.8884
AT1G65320			Cystathionine beta-synthase (C...		Potri.019G052650 [exp]	6.48	0.8371
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	9.48	0.8685
AT2G40270			Protein kinase family protein ...		Potri.001G280200 [exp]	9.79	0.8739
AT4G24110			unknown protein		Potri.001G082500 [exp]	13.60	0.7302

Compare expression of checked genes

Potri.008G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.