Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATGGT.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39550 481 / 6e-171 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT3G12070 136 / 3e-37 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT5G12210 132 / 2e-35 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2) AT5G40280 114 / 9e-28 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206001 [exp] 370 / 4e-129 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.013G012500 [exp] 156 / 1e-44 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.017G073200 [exp] 109 / 3e-26 AT5G40280 511 / 5e-180 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040303 [exp] 515 / 0 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 194 / 9e-60 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10039714 [exp] 162 / 5e-47 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10018502 [exp] 162 / 8e-47 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10032149 [exp] 97 / 7e-22 AT5G40280 465 / 1e-161 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10000944 [exp] 78 / 2e-17 AT2G39550 76 / 2e-17 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10014536 [exp] 80 / 4e-16 AT5G40280 422 / 1e-144 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10019318 [exp] 56 / 1e-08 AT2G39550 49 / 7e-07 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10017310 [exp] 0 / 1 AT2G39550 86 / 4e-23 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.008G054500.1 pacid=42808556 polypeptide=Potri.008G054500.1.p locus=Potri.008G054500 ID=Potri.008G054500.1.v4.1 annot-version=v4.1 ATGACTACATACACAGCAGCACCACCACCAACACCAGATTGGGACCCATCATCGTCCTCAGATGAAGAATCGCCGCCATCATCCTCGCTAACATTCGACA AGGAACGCCACGTGGCCTTCTTGGAGATGATGTACCATATGTTACCTTGCCATTACCAATCACAGGAGATCAACCATCTCACTCTCGCTTACTTCGTTAT CTCCGGTCTCGACATCCTCGGTTCCCTTGATCGCGTTGACAAAGATGCGGTTGCTGCTTGGGTTTTATCTTTGCAATCTAATCCCGGAGATAAAGCTGAA TTGAACAGTGGACAGTTCTATGGGTTTTGTGGCTCTAGATCTTCTCAATTTTCTTCGGACAATGATGGGATTTTAATTCAGAATCACAGCCATTTGGCAA GCACGTATTGTGCCCTGTCCATACTGAAGACTGTTGGCTACAATTTGTCAAATATCGACTCCAAATTAATATCCATGTCAATAAGAAACCTCCAGCAACC TGATGGGAGCTTTCTGCCTATCCATATTGGAGCAGAGACAGATCTTCGATTCATATATTGTGCTGCGGCCATCTGTTTTATGTTGGAGGATTGGAGTGGC ATGGATAGGGAAAAAACCAAGGAGTACATCTTCAAATGCCAGTCATATGACGGTGGCTTTGGGATGATTCCTGGTTCAGAATCTCATGGTGGAGGAACTT ACTGTGCAGTTGCTTCTCTTTGTTTGATGGGATTTATTGAAGATGATGTCCTGTCAAAAAGTGCAGCTTCTTCCATCATTGACATTCCATTGTTGTTGGA ATGGTGCTTACAGAGACAAGCAGCTGACGGTGGATTCCAAGGGAGAGCTAACAAGCCTAGCGACACATGTTATGCATTTTGGGTTGGGGCAGTTCTGAGG ATCTTAGGTGGATCCAAGTTGATTGATGGAACAGCTTTGCGGGGATTTTTGCTCACTTGTCAATCTGAGTATGGTGGTTTCAGTAAATTCCCAAATGAGC TGCCAGATCTATACCATTCCTACTATGGATACACTGCACTCAGTCTTTTGGAAGAGCCTGGCCTTAATGCACTCTCTGTTGAGCTTGGAATAACTGGTTT TGCTGCGCTAGGAATTTGA
AA sequence Show only first row Show all	>Potri.008G054500.1 pacid=42808556 polypeptide=Potri.008G054500.1.p locus=Potri.008G054500 ID=Potri.008G054500.1.v4.1 annot-version=v4.1 MTTYTAAPPPTPDWDPSSSSDEESPPSSSLTFDKERHVAFLEMMYHMLPCHYQSQEINHLTLAYFVISGLDILGSLDRVDKDAVAAWVLSLQSNPGDKAE LNSGQFYGFCGSRSSQFSSDNDGILIQNHSHLASTYCALSILKTVGYNLSNIDSKLISMSIRNLQQPDGSFLPIHIGAETDLRFIYCAAAICFMLEDWSG MDREKTKEYIFKCQSYDGGFGMIPGSESHGGGTYCAVASLCLMGFIEDDVLSKSAASSIIDIPLLLEWCLQRQAADGGFQGRANKPSDTCYAFWVGAVLR ILGGSKLIDGTALRGFLLTCQSEYGGFSKFPNELPDLYHSYYGYTALSLLEEPGLNALSVELGITGFAALGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Potri.008G054500 [exp]	0	1	Pt-ATGGT.1
AT3G12180			Cornichon family protein (.1)		Potri.016G051000 [exp]	2.82	0.9245
					Potri.001G466500 [exp]	4.00	0.9263
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	6.00	0.9198	Pt-DH1.2
AT3G28430			unknown protein		Potri.006G204600 [exp]	7.93	0.9121
AT5G13260			unknown protein		Potri.003G164100 [exp]	10.19	0.9094
AT5G40640			unknown protein		Potri.001G338900 [exp]	14.49	0.8536
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	14.86	0.9065
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	15.71	0.8993
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	19.23	0.8825
AT4G00290			Mechanosensitive ion channel p...		Potri.014G088200 [exp]	20.00	0.8739

Compare expression of checked genes

Potri.008G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.