Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 161 / 2e-48 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G56410 160 / 2e-47 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 160 / 2e-47 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 160 / 3e-47 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 157 / 3e-46 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 154 / 7e-45 HSP70B heat shock protein 70B (.1) AT1G09080 118 / 6e-32 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G42020 106 / 7e-28 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 106 / 8e-28 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G79930 79 / 3e-18 AtHsp70-14, HSP91 heat shock protein 91 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054900 [exp] 167 / 1e-49 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 165 / 4e-49 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 165 / 4e-49 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 164 / 8e-49 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 164 / 1e-48 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 164 / 1e-48 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 164 / 2e-48 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 162 / 5e-48 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 140 / 8e-40 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009071 [exp] 162 / 1e-50 AT3G09440 561 / 0.0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10025333 [exp] 165 / 8e-49 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 162 / 6e-48 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 162 / 2e-47 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024393 [exp] 162 / 2e-47 AT5G02310 1770 / 0.0 proteolysis 6 (.1) Lus10026099 [exp] 154 / 5e-47 AT1G16030 504 / 1e-176 heat shock protein 70B (.1) Lus10005953 [exp] 157 / 3e-46 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 157 / 4e-46 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10003202 [exp] 110 / 2e-29 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017306 [exp] 110 / 3e-29 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Potri.008G054801.1 pacid=42808047 polypeptide=Potri.008G054801.1.p locus=Potri.008G054801 ID=Potri.008G054801.1.v4.1 annot-version=v4.1 ATGGGAAATGGTCTAGATGGACCGGCGATCGGAATTGATATGTGGACAACGTACTCATGCGTTGGTGTTTGGCAACAGGACATAGTGGAGAACGTACCAA ATGATCAAGGTAACAGAATGACCCCATCTTGTGCTGCCTTCACTGGTATAGAGCGTCTGATTGGTGATGCTGCTATGAACCAGGCTGTTATGAATCCCAT CAACACTATTTTCGACATCTATATGTTAAAAGATGCGAAAAGGTGGGTTGGTAGGAGATTTAGTGATACTTTTGTGCAGAGCAATATCCAACATTGGCCA TTCAAAGTCCTTGAAGTTCCTCGTGACAAGCCCTTGATTGTGGTCAACTACAACGGTGAAGAGAAATAG
AA sequence Show only first row Show all	>Potri.008G054801.1 pacid=42808047 polypeptide=Potri.008G054801.1.p locus=Potri.008G054801 ID=Potri.008G054801.1.v4.1 annot-version=v4.1 MGNGLDGPAIGIDMWTTYSCVGVWQQDIVENVPNDQGNRMTPSCAAFTGIERLIGDAAMNQAVMNPINTIFDIYMLKDAKRWVGRRFSDTFVQSNIQHWP FKVLEVPRDKPLIVVNYNGEEK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054801 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G073000 [exp]	4.58	0.7810
					Potri.019G017150 [exp]	12.24	0.7887
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	13.56	0.8198	FRGA-A30.27
AT5G57340			unknown protein		Potri.018G090000 [exp]	17.49	0.8089
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	18.97	0.7861
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.014G102700 [exp]	20.29	0.7958	Pt-CYP78.2
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.002G201900 [exp]	21.16	0.7754
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.011G110400 [exp]	26.11	0.7322
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G189900 [exp]	28.00	0.7682
AT1G53440			Leucine-rich repeat transmembr...		Potri.006G014232 [exp]	34.81	0.7705

Compare expression of checked genes

Potri.008G054801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.