Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55460 546 / 0 C2H2ZnF DNA/RNA-binding protein Kin17, conserved region (.1) AT5G51795 190 / 4e-57 DNA/RNA-binding protein Kin17, conserved region (.1) AT4G25020 49 / 2e-06 D111/G-patch domain-containing protein (.1) AT1G33520 44 / 0.0001 MOS2 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204900 [exp] 658 / 0 AT1G55460 561 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Potri.003G104200 [exp] 50 / 2e-06 AT1G33520 339 / 2e-112 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Potri.001G129700 [exp] 48 / 8e-06 AT1G33520 345 / 9e-115 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005161 [exp] 585 / 0 AT1G55460 596 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10001697 [exp] 405 / 2e-141 AT1G55460 408 / 3e-142 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10012271 [exp] 155 / 9e-47 AT1G55460 152 / 4e-46 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10001696 [exp] 142 / 7e-42 AT1G55460 137 / 1e-40 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10004607 [exp] 52 / 6e-07 AT1G33520 396 / 8e-135 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Lus10004541 [exp] 51 / 1e-06 AT1G33520 381 / 9e-129 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Lus10012272 [exp] 42 / 4e-05 AT1G55460 41 / 1e-05 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10039439 [exp] 43 / 0.0001 ND 45 / 1e-05
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G055300.3 pacid=42806144 polypeptide=Potri.008G055300.3.p locus=Potri.008G055300 ID=Potri.008G055300.3.v4.1 annot-version=v4.1 ATGGGGAAGAACGATTTCCTTACACCGAAAGCGATAGCGAATCGAATCAAAGCGAAAGGTCTTCAGAAACTTCGATGGTATTGTCAGATGTGTCAAAAAC AATGTCGAGACGAGAACGGATTCAAGTGCCACTGTATGAGCGAAAGCCACCAACGGCAAATGGAAGTCTTCGGTCAAAACCCTAACAGAATCGTCGACGG CTATTCTGAAGAATTCGAAAACGAGTTCCTCGATTCGATGAAACGGAGCCATAGGTTTTCTCGTGTCGCGGCGACCGTGATTTACAATGAGTATATTCAT GACAGGCACCATATTCATATGAATTCGACACAGTGGGCGACGTTGACGGAGTTTGTTAAGCATCTGGGGAGAACTGGAAAGTGTAAAGTCGATGAGACTC CGAAAGGGTGGTTTATGACTTATATTGATAGGGATTCGGAGACGATTTTTAAGGAGAATGCGAAGAGTAAGAGAGTCAGGGCGGATTTAGCAGAGGAGGA GAAGCAGGAGAGGGAAATTAAAAAGCAGATTGAGAAGGCTGAAGAGTTTTTGACTGTTAAAAATGACAGTGTGGATAGTGGTGAAGTGCGGCCAGCGAAG GAGTTGAAATTGGACAGCGGGGTGAAGGTTGGGTTTGCCCTTGGTTCGAAGAGTAATAATGTTGGGAAAGAGACAGGTGAGAGTTTTAGTTCTAGATTGG TTTTTGAGGAAGTTGAGGATAAGGAGAGGAAGATGGGGAAAAATAAGGAAGGTGGTATTGGAGGTAAAAGTGGGAAATCGGCGTTGGAGGAGTTGATGAA AGAGGAAGAGAAGGCAAAGGAGAGGACTAATAGAAAGGATTATTGGTTGTTTGAAGGGATTATCGTTAAGGTTATGAGTAAGGCGTTGGCAGAGAAAGGG TATTATAAGCAGAAAGGGGTAGTGAGGAAAGTGATTGATAAGTATGTTGCTGAAATTGAGATTCTTGAGAATAAGCATAAGTTGAGGGTTGATCAGGAAG AGCTTGAGACTGTGATTCCGCAGATTGGGGGTTTGGTGAAAATAGTGAATGGGGCATATAGAGGTTCAAATGCCAGGTTGTTGGGAGTGGATACGGAGAA GTTTTGTGCCAAGGTGCAGATAGAGAAGGGAATTTATGACGGGAGAGTGCTTAAGGCTGTTGAATACGAGGATATTTGCAAACTTGCCTAG
AA sequence Show only first row Show all	>Potri.008G055300.3 pacid=42806144 polypeptide=Potri.008G055300.3.p locus=Potri.008G055300 ID=Potri.008G055300.3.v4.1 annot-version=v4.1 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMEVFGQNPNRIVDGYSEEFENEFLDSMKRSHRFSRVAATVIYNEYIH DRHHIHMNSTQWATLTEFVKHLGRTGKCKVDETPKGWFMTYIDRDSETIFKENAKSKRVRADLAEEEKQEREIKKQIEKAEEFLTVKNDSVDSGEVRPAK ELKLDSGVKVGFALGSKSNNVGKETGESFSSRLVFEEVEDKERKMGKNKEGGIGGKSGKSALEELMKEEEKAKERTNRKDYWLFEGIIVKVMSKALAEKG YYKQKGVVRKVIDKYVAEIEILENKHKLRVDQEELETVIPQIGGLVKIVNGAYRGSNARLLGVDTEKFCAKVQIEKGIYDGRVLKAVEYEDICKLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.018G075500 [exp]	1.00	0.9125
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	2.00	0.9115
AT5G19900			PRLI-interacting factor, putat...		Potri.003G214300 [exp]	3.00	0.9061
AT5G38720			unknown protein		Potri.017G108700 [exp]	4.89	0.8558
AT1G56290			CwfJ-like family protein (.1)		Potri.001G415900 [exp]	5.65	0.8933
AT3G51650			unknown protein		Potri.016G133700 [exp]	6.00	0.8671
AT5G30490			unknown protein		Potri.010G151300 [exp]	6.00	0.8102
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.014G104500 [exp]	6.70	0.8258
AT5G38720			unknown protein		Potri.004G106900 [exp]	6.92	0.8451
AT4G33740			unknown protein		Potri.009G083900 [exp]	7.00	0.8562

Compare expression of checked genes

Potri.008G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.