Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46540 182 / 7e-56 ENTH/VHS family protein (.1) AT1G08670 142 / 3e-41 ENTH/VHS family protein (.1) AT3G23350 127 / 4e-35 ENTH/VHS family protein (.1) AT2G43160 47 / 7e-06 ENTH/VHS family protein (.1.2.3.4) AT3G59290 46 / 2e-05 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204100 [exp] 266 / 1e-89 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 206 / 8e-65 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 198 / 8e-62 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.002G231100 [exp] 52 / 3e-07 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.014G151300 [exp] 47 / 7e-06 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040824 [exp] 196 / 3e-61 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 194 / 2e-60 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 179 / 3e-55 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10005164 [exp] 172 / 1e-49 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10021173 [exp] 151 / 5e-43 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 150 / 2e-42 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10023415 [exp] 102 / 4e-26 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10001692 [exp] 62 / 1e-11 AT3G46540 57 / 8e-10 ENTH/VHS family protein (.1) Lus10025527 [exp] 51 / 7e-07 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10026741 [exp] 48 / 5e-06 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF01417 [poplar] [flax] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Potri.008G055600.1 pacid=42807264 polypeptide=Potri.008G055600.1.p locus=Potri.008G055600 ID=Potri.008G055600.1.v4.1 annot-version=v4.1 ATGGCTATGCTTCTAAACAAAAATAGGAAGATGGGCAGCCCTCTTCTCCATGAATTCAAGAGGCAAGCTTCTTTCTTCTTCAAAGAGAAAATCAAAACTG CTCGTTTGGCACTAACCGACGTTACACCAACAGAACTGTTGACAGAAGAGATCACAAATGGAGATCTTTGGGCTCCAGATACACGTGCTATGGGTGTTAT TTCACGGGCTGCTTTTGAAGTTGATGATTACTGTAGAATTGTGGACATTCTACACAAGAGGTTGATAAAATTTGATAGGAAAAACTGGAGAATCTTTTAC AAGACTCTGCTTCTATTGGAACACCTGCTAACCCATGGACCTCTACGGGTTGCTGATGAGTTTCAGTGTGATAAAGATGCCATTAAGGAGATGGCTAGCT TTCAGTTTGTCGATGAGAAAGGATTCAACTGGGGTTCAAGTGTTAGAAAACTATCCGAGAGAATCCTGGAGCTACTTGAAAATGAAGAGTTTCTCAAAGA AGAGAGGGCAAGCGCTCGTAAGTTAACACGAGAGATTCAAGGGTTTGGTAGCTTCTCCCAACGATCCTCTTCAGCTGAGGAAAGCTTAAAAGCATTAGGC TTCAGGACACGTTTGAGGTGTAACTCTATCTATAGCCATCAACACAATCAAGAAAAAGATGACGAGTTTATGGACTCGAAGGGGAAGCTTTTGCACGAGG AAAGAATTCAAATCCATGAGTATACCAGCCATCCAGCACTTGGAAACCAAGAAAATATCAGCAGAGAGGAATATACTGCAGAAGATCATCCATTCTGCGA CAATCATCATCATACAACAGTAGCCCTACTTTCTGATGCAGAATGA
AA sequence Show only first row Show all	>Potri.008G055600.1 pacid=42807264 polypeptide=Potri.008G055600.1.p locus=Potri.008G055600 ID=Potri.008G055600.1.v4.1 annot-version=v4.1 MAMLLNKNRKMGSPLLHEFKRQASFFFKEKIKTARLALTDVTPTELLTEEITNGDLWAPDTRAMGVISRAAFEVDDYCRIVDILHKRLIKFDRKNWRIFY KTLLLLEHLLTHGPLRVADEFQCDKDAIKEMASFQFVDEKGFNWGSSVRKLSERILELLENEEFLKEERASARKLTREIQGFGSFSQRSSSAEESLKALG FRTRLRCNSIYSHQHNQEKDDEFMDSKGKLLHEERIQIHEYTSHPALGNQENISREEYTAEDHPFCDNHHHTTVALLSDAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	0	1
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Potri.008G139100 [exp]	1.00	0.9555	Pt-PAP8.3
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	1.41	0.9538
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.013G131200 [exp]	3.87	0.9495
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.019G100001 [exp]	4.47	0.9359
AT4G20820			FAD-binding Berberine family p...		Potri.011G162968 [exp]	4.89	0.9380
AT1G56320			unknown protein		Potri.005G019200 [exp]	4.89	0.9252
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.018G067000 [exp]	8.36	0.9278	Pt-ACS3.2
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G105900 [exp]	8.48	0.9245
AT2G24130			Leucine-rich receptor-like pro...		Potri.018G103400 [exp]	9.48	0.9117
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G273001 [exp]	10.67	0.9082

Compare expression of checked genes

Potri.008G055600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.