Plant FIBer expression Database

Potri.008G055800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55420 254 / 4e-86 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G203900
[exp]
386 / 2e-138 AT3G55420 253 / 7e-86 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005165
[exp]
298 / 4e-103 AT3G55420 245 / 2e-82 unknown protein
Lus10023413
[exp]
281 / 2e-96 AT3G55420 258 / 3e-87 unknown protein
Lus10040295
[exp]
279 / 2e-95 AT3G55420 249 / 4e-84 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G055800.1 pacid=42807313 polypeptide=Potri.008G055800.1.p locus=Potri.008G055800 ID=Potri.008G055800.1.v4.1 annot-version=v4.1
ATGGAAGACAAAGAGAAGAAGAAACACCATAAGAAGCAGAAACACCAACACCCAAATGATCAAACCACCAAACCATCATCAGATTTTTCTTTCAAACCTA
GCTCAGAAGTGAAGGGTCTTCGTTTTGGAGGCCAGTTCATTGTAAAATCTTTCACAATCCGGCGAGCAAGGCCACTCGAGCTTCTAAAAGTCCTCTCGTA
TCCACCAACAAATAAGAACAGCGACAACAATAAGACCCCTTTCCCTTCAACAACAGCTTTTCTGCCTACAAACTTCACCATCTTAGCACACCATGCTTGG
CATACCTTAACACTTGGTCTTGGTACCAAGAAATCCAAAGTACTGTTATTTGTCTTCGAATCCGAGTCCATGAGGTTGGCTGTCGACAGAATATGGCCGC
CAGAGATACCACTTGGAGAAGTAAACAAGAAACTTATCAGAGGCCTGAATGGTTGTGAAATGGCAAGATTTAAGTTCAGAAAAGGATGCATTACTTTTTA
TGTCTATGCAGTGAGGCGTGTAGGAAACATGGGATTCTCTTGTGCAGATGATTTAAAGATTATATTACAGTCCGTGGTTGCACTCAATGATTTCTTGGAT
CACACTGCTATGCTTGCCATGCCTCACCAAAGAAGCATCAACTATGCATCACCCCAGGTCGCCATGGCTCACTAG
AA sequence
>Potri.008G055800.1 pacid=42807313 polypeptide=Potri.008G055800.1.p locus=Potri.008G055800 ID=Potri.008G055800.1.v4.1 annot-version=v4.1
MEDKEKKKHHKKQKHQHPNDQTTKPSSDFSFKPSSEVKGLRFGGQFIVKSFTIRRARPLELLKVLSYPPTNKNSDNNKTPFPSTTAFLPTNFTILAHHAW
HTLTLGLGTKKSKVLLFVFESESMRLAVDRIWPPEIPLGEVNKKLIRGLNGCEMARFKFRKGCITFYVYAVRRVGNMGFSCADDLKIILQSVVALNDFLD
HTAMLAMPHQRSINYASPQVAMAH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55420 unknown protein Potri.008G055800
[exp]
0 1
AT1G66810 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H t... Potri.017G119900
[exp]
4.12 0.8993
AT5G25830 GATA GATA12 GATA transcription factor 12 (... Potri.006G237700
[exp]
8.48 0.8084
AT1G68795 CLE12 CLAVATA3/ESR-RELATED 12 (.1) Potri.010G130400
[exp]
9.59 0.8238 CLE12.1
AT1G66810 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H t... Potri.004G095100
[exp]
13.41 0.8776
AT5G65930 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN... Potri.001G455300
[exp]
15.87 0.8450
AT5G02010 ATROPGEF7, ROPG... RHO guanyl-nucleotide exchange... Potri.016G104400
[exp]
16.73 0.8733
AT1G49890 QWRF2 QWRF domain containing 2, Fami... Potri.009G089800
[exp]
17.88 0.8589
AT1G09540 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAI... Potri.005G001600
[exp]
19.89 0.8671 MYB61.2
AT2G46300 Late embryogenesis abundant (L... Potri.014G094400
[exp]
19.89 0.8569
AT2G45040 Matrixin family protein (.1) Potri.014G058200
[exp]
20.27 0.8759

Potri.008G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.