Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 463 / 3e-161 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G39640 419 / 2e-142 glycosyl hydrolase family 17 protein (.1) AT2G16230 385 / 3e-130 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 370 / 5e-124 O-Glycosyl hydrolases family 17 protein (.1) AT3G46570 353 / 2e-119 Glycosyl hydrolase superfamily protein (.1) AT5G55180 335 / 7e-111 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 327 / 1e-107 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 325 / 3e-107 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 311 / 4e-101 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056000 [exp] 605 / 0 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 595 / 0 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 565 / 0 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 456 / 2e-158 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G153800 [exp] 395 / 1e-134 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 381 / 6e-129 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 379 / 2e-128 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.015G010100 [exp] 365 / 7e-124 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G094400 [exp] 348 / 4e-116 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040294 [exp] 662 / 0 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 498 / 2e-174 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 497 / 6e-174 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 478 / 3e-167 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 422 / 4e-145 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005166 [exp] 421 / 1e-143 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 392 / 1e-133 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 381 / 7e-129 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 376 / 7e-127 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 356 / 9e-119 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.008G055900.1 pacid=42807616 polypeptide=Potri.008G055900.1.p locus=Potri.008G055900 ID=Potri.008G055900.1.v4.1 annot-version=v4.1 ATGGCCACTATCACCACCACATCCATCACTACCGCCCTTCTCATCATCTCCACCCTCCTCCACTTTTCCACCACAGCCTTTGCGATCGGTGTCAATTATG GTACCCTAGCCAACAATCTTCCGTCACCATCTCAGGTGGCTAGCTTCCTCAAAACACAAACAACTATCGATAGCATCAAAATCTTTGACACCAATCCTGA TATTCTTCGCGCTTTTGCCAATTCGAACATCACCGTGACTGTCACTGTAGGTAATGGTGATATTCCTGCTCTCGTCGATGTAAATGCCGCCAGCCAATGG GTTGCAAACAATATCAAGCCATATTATCCGCAAACAAGGATTAAACTCATCGCTGTTGGCAATGAAATCTTGTTTACTGGTAATAAAGAGTGGATTTCTC GTCTCGTTCCCTGCATGAAGTCCTTGCATCAGGCTCTTGTTCATGCTGGAATCAAAGATGTTCAGGTCTCAACTCCCCACACCCTTGGAATTTTGCACAA TTCTGTGCAACCAAGCGCTGCCCGGATAAGGCCTGGCTATGACAGGGTCATATTTGCTCCCATGCTCCAATTTCTACGTCAAACCAAATCCCCTCTCATG GTTAACCCGTATCCTTATTTTAGCTACTCTCCGAGCATGGAAAACTACATCCTCTTCAAGCCTAACCGCGGTGTCCACGACACTAACACCAACATTACCT ACACGAACATGTTCGTTGCAATGATGGACGCGGTTTATTCGGCAATAAAAGCAATGGGTTATGGTGACTTGGACATTGTCGTCGCCGAGTCCGGTTGGCC CTCACTTGGAGACCCGAACCAGCCCATGTGTACCGTGGAGAATGCAGTCTCGTATAACAAGAACATGATTAAGGTTGTCACTTCAGGGAACGGGACTCCG TTAATGCCTAAACGACGGTTCCAGACATATGTCTTTTCTTTGTTCAATGAGAATCTTAAACCCGGCTCAACAGCAGAGAGGAATTGGGGTTTGTTTAGGC CAGAATTTACCCCGGTTTATGATGTTGGGATTATGCGCAATGGACAGTCCAGTAGACCAACACCACCATCACCTACAAAAAGCAAGAAATGGTGCGTTCC AAAAGCTGACGCTACTGATAAAGCCTTACAAGCAAACATAGACTATGTGTGCAGCCAGGGTATGGATTGCAAGCCTATTCAAGCTGGCGGTGCCTGTTTC AGTCCAAACAATATCAGGTCCCATGCATCATATATCATGAACTCTTACTATCAATCCCATGGTAGCAATGATTTCAATTGTGATTTCTCTCAAACCGCTG TCCTCACCACCTCTGACCCAAGTCACGGCACTTGTAAATACAATTGA
AA sequence Show only first row Show all	>Potri.008G055900.1 pacid=42807616 polypeptide=Potri.008G055900.1.p locus=Potri.008G055900 ID=Potri.008G055900.1.v4.1 annot-version=v4.1 MATITTTSITTALLIISTLLHFSTTAFAIGVNYGTLANNLPSPSQVASFLKTQTTIDSIKIFDTNPDILRAFANSNITVTVTVGNGDIPALVDVNAASQW VANNIKPYYPQTRIKLIAVGNEILFTGNKEWISRLVPCMKSLHQALVHAGIKDVQVSTPHTLGILHNSVQPSAARIRPGYDRVIFAPMLQFLRQTKSPLM VNPYPYFSYSPSMENYILFKPNRGVHDTNTNITYTNMFVAMMDAVYSAIKAMGYGDLDIVVAESGWPSLGDPNQPMCTVENAVSYNKNMIKVVTSGNGTP LMPKRRFQTYVFSLFNENLKPGSTAERNWGLFRPEFTPVYDVGIMRNGQSSRPTPPSPTKSKKWCVPKADATDKALQANIDYVCSQGMDCKPIQAGGACF SPNNIRSHASYIMNSYYQSHGSNDFNCDFSQTAVLTTSDPSHGTCKYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G055900 [exp]	0	1
AT1G05340			unknown protein		Potri.006G021600 [exp]	1.00	0.9157
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.009G145400 [exp]	7.93	0.8910	CYP94C5,Pt-CYP94.4
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	9.79	0.9004	Pt-ACA2.1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	10.95	0.8707
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	11.48	0.8564
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014328 [exp]	12.24	0.8755
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	13.52	0.7912
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	15.16	0.8296
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.003G159800 [exp]	16.43	0.8762
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.009G141400 [exp]	19.28	0.7909

Compare expression of checked genes

Potri.008G055900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.