Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GNS2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 460 / 4e-160 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G39640 406 / 1e-137 glycosyl hydrolase family 17 protein (.1) AT3G46570 366 / 1e-124 Glycosyl hydrolase superfamily protein (.1) AT2G16230 358 / 3e-119 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 350 / 4e-116 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 312 / 3e-102 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 308 / 2e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 304 / 9e-99 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 277 / 5e-88 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055900 [exp] 575 / 0 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 531 / 0 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 444 / 6e-154 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G203800 [exp] 422 / 1e-144 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 366 / 5e-123 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 365 / 8e-123 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.015G010100 [exp] 356 / 3e-120 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.009G115400 [exp] 351 / 3e-117 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 322 / 1e-105 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040294 [exp] 550 / 0 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 486 / 1e-169 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 486 / 2e-169 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 463 / 4e-161 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005166 [exp] 448 / 3e-154 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 417 / 3e-143 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 385 / 1e-130 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 360 / 1e-120 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 353 / 4e-118 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10005459 [exp] 340 / 8e-115 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.008G056000.1 pacid=42806308 polypeptide=Potri.008G056000.1.p locus=Potri.008G056000 ID=Potri.008G056000.1.v4.1 annot-version=v4.1 ATGGTCGCAAAAACGAACCTTTCCCACCACCGCCGCCTCCTCCTCCTCGTCTCCACCCTCCTCCACCTCTTCACTACCACATTTGCCATTGGTGTTAACT ACGGGACCCTAGGCAACAACCTTCCCCCACCCTCCCAGGTTGCCAACTTTATCAAAACTCAAACGATCATTGACAGCATCAAAATCTTTGACACAAACCA TGACATTCTCAATGCCTTTGCCAATACTGGCATTACTGTGACGGTCACGGTTGGCAATGGTGATATTCCTTCCCTTGCCAATTTAAATAGCGCCCGCGGA TGGGTTGCTGCCAATATTGCACCGTTCCATCCACAGACAAGGATTAATAGGATTGTTGTTGGTAATGAAATTATGGCCACTGCTAATAAGCCTTGGATTT CTAATCTCGTGCCTGCCATGCGGACCATTCACAAGGCTCTTCTTCTCGCTGGAATCAGAAATGTTCAGGTCACAACACCTCATTCTCTTGGCATACTCTC AATCTCCGAGCCACCAAGTGCCGGCCAGTTCAGGCGTGGCTTCGACCGAGCCATATTTGCACCCATGCTCCAATTTTTAAGGGAAACCAAATCACCCTTC ATGGTTAACCCGTACCCTTATTTTGGCTACTCTCCAAAAATGGCAAACTATGCTCTTTTCAAGCGCAACAGAGGTGTGCATGATAGATACACTGGCATTA CATACACTAACATGTATGATGCAATGTTGGATGCTACTTATTCAGCAATGAGAAAATTGGGCTATGGTGATGTGGGCATTGTAGTGGGCGAGACAGGTTG GCCCTCGGTTTGTGACCCTGGTCAACCAGCTTGTAGCATGGAGAATGCTGCTTGGTTCAATGGGAATTTGGTTAGACGTGCTAGACAAGGGAAAGGCACA CCTTTGATGCCAAACCGGCGGTTTGAGACTTATCTTTTCTCGTTGTTCAATGAGAATCTCAAACCCGGCCCGACCGCTGAAAGAAACTGGGGGCTGTTTA GGCCTGATTTTAGCCCAATTTACGATGCTGGCATTTTGCGCAATGGGCAGAGAGGCAGTGGTCGCGGTGGTGGAAGGCAGAGGCCCAGACCAACCCCAGG GAAGCAGTGGTGTGTGCCAAAACCTGGCGTTAGTGATCAAGCTTTGCAAGCAAACATAGACTATGCATGCAGCCAGGGTGTGGATTGCAAGCCTATTCAA CCTGGTGGTGCCTGCTTTGATCCTAACAATGTGAGATCTCATGCTTCGTATGTGATGAACTTTTTTTACCAAACCCACGGTCGCCAAGCTTTCAATTGTG ATTTCTCCAACACCGGTGTCCTAACTGCTGTCAACCCAGGTCACGGCACATGCAGATTCGTCTGA
AA sequence Show only first row Show all	>Potri.008G056000.1 pacid=42806308 polypeptide=Potri.008G056000.1.p locus=Potri.008G056000 ID=Potri.008G056000.1.v4.1 annot-version=v4.1 MVAKTNLSHHRRLLLLVSTLLHLFTTTFAIGVNYGTLGNNLPPPSQVANFIKTQTIIDSIKIFDTNHDILNAFANTGITVTVTVGNGDIPSLANLNSARG WVAANIAPFHPQTRINRIVVGNEIMATANKPWISNLVPAMRTIHKALLLAGIRNVQVTTPHSLGILSISEPPSAGQFRRGFDRAIFAPMLQFLRETKSPF MVNPYPYFGYSPKMANYALFKRNRGVHDRYTGITYTNMYDAMLDATYSAMRKLGYGDVGIVVGETGWPSVCDPGQPACSMENAAWFNGNLVRRARQGKGT PLMPNRRFETYLFSLFNENLKPGPTAERNWGLFRPDFSPIYDAGILRNGQRGSGRGGGRQRPRPTPGKQWCVPKPGVSDQALQANIDYACSQGVDCKPIQ PGGACFDPNNVRSHASYVMNFFYQTHGRQAFNCDFSNTGVLTAVNPGHGTCRFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G056000 [exp]	0	1	Pt-GNS2.1
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	1.41	0.9374
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	3.87	0.9187
AT1G14390			Leucine-rich repeat protein ki...		Potri.001G147700 [exp]	4.24	0.9249
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	4.47	0.9307
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.005G139700 [exp]	5.65	0.9155
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	11.13	0.9248
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	11.66	0.9063	MLO4.1
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	12.84	0.9125
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	15.58	0.9126
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.002G104300 [exp]	18.33	0.8823

Compare expression of checked genes

Potri.008G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.