Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07570 528 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 521 / 0 APK1B protein kinase 1B (.1.2.3) AT5G02290 514 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G39660 500 / 3e-177 BIK1 botrytis-induced kinase1 (.1) AT2G02800 472 / 6e-166 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 469 / 3e-165 PBL1 PBS1-like 1 (.1.2) AT1G14370 461 / 2e-161 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT5G15080 445 / 4e-154 Protein kinase superfamily protein (.1) AT1G26970 437 / 2e-152 Protein kinase superfamily protein (.1) AT3G28690 436 / 2e-152 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203400 [exp] 702 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G031300 [exp] 559 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 556 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 551 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 484 / 1e-170 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 482 / 7e-170 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.008G194700 [exp] 448 / 9e-156 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 447 / 2e-155 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 447 / 4e-155 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002697 [exp] 563 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 563 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10024391 [exp] 535 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 535 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 534 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016537 [exp] 527 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 523 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10004964 [exp] 501 / 3e-177 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 496 / 2e-175 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10012850 [exp] 464 / 1e-162 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G056400.2 pacid=42808615 polypeptide=Potri.008G056400.2.p locus=Potri.008G056400 ID=Potri.008G056400.2.v4.1 annot-version=v4.1 ATGGGTTCGTGCTTTAGTGCTAGAGTTAAAGCTGAGAGTCTTCCTTGTAATGGGTTGAACACAAAATACGCTGGCAGAAGTGGCAATGACAGGAGTGGGT CAAGCAGCAAGGTATCATCTTCTACAGTGCCTTCAACTCCTCGGACACAGGGTGAGATCTTGCAGTCCTCCAATTTGAAGAGCTTTTCCTTTAATGAATT AAAAGCAGCTACCAGGAACTTCCGTCCAGATAGTGTGTTGGGCGAAGGTGGTTTTGGTTGCGTGTTCAAAGGGTGGATTGATGAGCATTCATTGACAGCT GCCAAGCCTGGAACAGGCATTGTCATTGCTGTAAAGAGGCTTAGCCAAGAGAGTTTCCAGGGTCATCAGGAATGGTTGGCAGAAATCAACTACCTGGGCC AGTTGTATCATCCAAATCTAGTGAAATTGATCGGCTACTGCTTAGAAGATGACCACCGGCTTTTGGTTTACGAGTTTATGCCCAAGGGCAGCTTGGAGAA TCATCTATTCAGAAGGGCTTCTTATTTTCAACCACTCTCATGGAATCTCCGCATGAAGGTTGCCCTTGGTGCTGCCGAGGGTTTAGCATATCTTCACAGT GACAAGGCGAAAGTTATATATAGAGACTTTAAGGCATCTAATATCCTGCTCGATTCGAGTTATGGGGCCAAACTCTCTGATTTTGGGTTGGCCAAGGATG GGCCAACAGGCAGTAAAAGCCATGTATCTACAAGGGTCATGGGTACCCACGGCTACGCAGCTCCTGAATATATGGCAACAGGTCATCTAACAGCAAAAAG TGACGTGTACAGTTTTGGGGTTGTTCTCCTTGAAATGTTGTCTGGCAGACGAGCTATAGACAAAAACAGGCCCTCCAAGGAACAATATTTAGTTGAATGG GCGAGGCCTTACCTTAGCAGTAAGCGGAGAATTTTCCAAGTCATGGATGCTCGCATCCAAGGCCAGTATTCATCGAGTGACGCTCTCAAAGCGGCAAATC TTGCAATCCAATGTCTATCAGCAGAACCAAGATATAGGCCAAACATGGAAGAAGTGGTAAAAGCATTGGAACAACTTCACAATTCCAATAACAATGATGG ATCCAGGGGCTCTCGCGGTGAAATCCCCCGAAGAGTTCATCGAAGTTCAAGCAATGGTCCTACATATCATAGGAAAAATGAAGTATCCAATGGAAAACCT GCCTCTTATGCAGGGCCATGTGTTTCACCTCTTCGTACATAA
AA sequence Show only first row Show all	>Potri.008G056400.2 pacid=42808615 polypeptide=Potri.008G056400.2.p locus=Potri.008G056400 ID=Potri.008G056400.2.v4.1 annot-version=v4.1 MGSCFSARVKAESLPCNGLNTKYAGRSGNDRSGSSSKVSSSTVPSTPRTQGEILQSSNLKSFSFNELKAATRNFRPDSVLGEGGFGCVFKGWIDEHSLTA AKPGTGIVIAVKRLSQESFQGHQEWLAEINYLGQLYHPNLVKLIGYCLEDDHRLLVYEFMPKGSLENHLFRRASYFQPLSWNLRMKVALGAAEGLAYLHS DKAKVIYRDFKASNILLDSSYGAKLSDFGLAKDGPTGSKSHVSTRVMGTHGYAAPEYMATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSKEQYLVEW ARPYLSSKRRIFQVMDARIQGQYSSSDALKAANLAIQCLSAEPRYRPNMEEVVKALEQLHNSNNNDGSRGSRGEIPRRVHRSSSNGPTYHRKNEVSNGKP ASYAGPCVSPLRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	0	1
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	1.00	0.9321
AT1G05340			unknown protein		Potri.016G019201 [exp]	2.23	0.9231
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	2.44	0.9301
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.015G086800 [exp]	3.00	0.9099
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.016G071600 [exp]	4.24	0.9308
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	5.29	0.9231
AT1G53380			Plant protein of unknown funct...		Potri.011G108000 [exp]	6.00	0.8871
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	6.70	0.8995
AT4G09760			Protein kinase superfamily pro...		Potri.005G197500 [exp]	7.34	0.8987
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G277400 [exp]	8.54	0.8711

Compare expression of checked genes

Potri.008G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.