Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39670 622 / 0 Radical SAM superfamily protein (.1.2) AT3G19630 195 / 3e-58 Radical SAM superfamily protein (.1) AT1G60230 183 / 5e-53 Radical SAM superfamily protein (.1) AT1G50050 64 / 1e-11 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203300 [exp] 273 / 3e-89 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2) Potri.010G040700 [exp] 187 / 2e-54 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.001G294900 [exp] 184 / 2e-54 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002698 [exp] 654 / 0 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10000953 [exp] 647 / 0 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10020989 [exp] 180 / 1e-52 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10005409 [exp] 179 / 2e-52 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1) Lus10013005 [exp] 158 / 2e-43 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10029159 [exp] 124 / 2e-31 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000081 [exp] 91 / 8e-21 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF04055 [poplar] [flax] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Potri.008G056500.1 pacid=42806224 polypeptide=Potri.008G056500.1.p locus=Potri.008G056500 ID=Potri.008G056500.1.v4.1 annot-version=v4.1 ATGATTGCCACTTCAATGTCTCTGCTCCAGCACGTGTGTTCCGTGCCAATCGCACGTGCCATGCGACCTCGTTCCGTTACCATCATATCCTCTCGTAGCC TCTCCACCACAACCTCTTCCTCCTCCACTACATCTCGTGCCTCTCAAGTGGACCCTCACGTGCTCCTCGGCATGTCGGAGCCCGAGCTTCAACAACTCGC AACCGACCTTGGACAGCAAAGCTATAGAGGAAAGCAGCTCCATCATCTAATATACCAGAGAAAAGTCAAAGAAATCCAGGATTTTAGTCAATTGCCTCTG GTATTTCGAAATGATCTTCAAGAAGCTGGATGGAAAGTCGGGCGGTCACCTATTTTTCAAACTGTAACCGCAGCTGATGGCACGGTTAAGTTACTGATAA GACTGGAGGATAACAGATTGATTGAAACTGTTGGTATTCCAGTTGAAGATGAGAAAGGTTCAATGCGGCTTACTGCCTGTGTTTCATCTCAGGTAGGCTG TCCTTTGCGCTGCTCATTTTGTGCCACCGGAAAGGGTGGTTTTTCAAGGAATCTTCAAAGGCATGAAATTGTTGAGCAGGTTTTGGCTGTTGAGGAGATC TTCAAGCACAGGGTGACAAATGTAGTGTTCATGGGAATGGGTGAACCAATGTTGAACTTGAAGTCGGTACTTGAAGCACACCGATGCTTGAATAAGGATG TTCAAATTGGGCAAAGAATGATCACAATATCAACTGTGGGGGTTCCGAACACAATTAAAAAGCTGGCTTCTCATAAACTTCAGTCAACATTGGCCTTAAG CTTACATGCTCCAAATCAGAAACTTAGAGAAACAATTGTTCCAAGTGCGAAATCCTACCCTCTAGATGCAATTATGAAAGATTGCAAGGAGTACTTCCTT GAAACCAGTCGACGAGTATCCTTTGAGTATGCACTTTTAGCTGGGGTCAATGATAGAGTGGAGCATGCTAAAGAACTTGCTGAGCTACTTCACCAGTGGG GACGTGGTCATCATGTGAATCTGATTCCTTTCAATCCAATCCAAGGTTCTGATTACAAGCGTCCACACAAAAAGGCGATACAAGCATTTGCAGCTGTGCT AGAGTCTCGTAAAGTAACTGTAAGCGTGCGCCAAACAAGGGGCCTGGATGCAAGTGCAGCTTGTGGTCAACTAAGAAATGAATTCCAAAAAAGTCCTTTA GTCATAAATTCTGACAGCTTGGAATCTCAACCAGAGAATGTTGCAGTCGCATGCTGA
AA sequence Show only first row Show all	>Potri.008G056500.1 pacid=42806224 polypeptide=Potri.008G056500.1.p locus=Potri.008G056500 ID=Potri.008G056500.1.v4.1 annot-version=v4.1 MIATSMSLLQHVCSVPIARAMRPRSVTIISSRSLSTTTSSSSTTSRASQVDPHVLLGMSEPELQQLATDLGQQSYRGKQLHHLIYQRKVKEIQDFSQLPL VFRNDLQEAGWKVGRSPIFQTVTAADGTVKLLIRLEDNRLIETVGIPVEDEKGSMRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVLAVEEI FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEYFL ETSRRVSFEYALLAGVNDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSVRQTRGLDASAACGQLRNEFQKSPL VINSDSLESQPENVAVAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39670			Radical SAM superfamily protei...		Potri.008G056500 [exp]	0	1
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	1.00	0.9686
AT3G06950			Pseudouridine synthase family ...		Potri.008G206200 [exp]	6.48	0.9614
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	6.63	0.9643
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	6.70	0.9488
AT3G52155			Phosphoglycerate mutase family...		Potri.006G000600 [exp]	6.92	0.9529
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	10.19	0.9521
AT3G26115			Pyridoxal-5'-phosphate-depende...		Potri.010G051200 [exp]	10.81	0.9230
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	14.00	0.9498
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	14.42	0.9450
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	15.68	0.9523

Compare expression of checked genes

Potri.008G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.