Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13820 427 / 7e-141 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G12560 419 / 3e-138 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT1G07540 298 / 2e-91 MYB TRFL2 TRF-like 2 (.1) AT3G46590 286 / 8e-88 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G59430 238 / 8e-70 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 132 / 1e-33 MYB TRFL4 TRF-like 4 (.1) AT2G37025 44 / 0.0003 TRFL8 TRF-like 8 (.1.2) AT1G17460 43 / 0.0008 MYB TRFL3 TRF-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202400 [exp] 1018 / 0 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.009G032000 [exp] 499 / 4e-168 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.001G241600 [exp] 483 / 2e-161 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.006G086500 [exp] 358 / 7e-114 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.003G063700 [exp] 47 / 5e-05 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.001G170200 [exp] 44 / 0.0006 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 44 / 0.0006 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002704 [exp] 649 / 0 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 627 / 0 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 602 / 0 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 545 / 0 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10016527 [exp] 306 / 3e-94 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040795 [exp] 289 / 6e-88 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10024385 [exp] 278 / 2e-83 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 259 / 1e-76 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10013809 [exp] 47 / 4e-06 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 47 / 4e-05 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G057300.16 pacid=42805784 polypeptide=Potri.008G057300.16.p locus=Potri.008G057300 ID=Potri.008G057300.16.v4.1 annot-version=v4.1 ATGGTGGTGAAGAAGAGACAATATTATGGTTTCAATGGCTTCCATATGCCCCCAGTTCCCAGGGCTCCGAGATCAGCTAGACAGAGGGGTTTGAGTTTGA ATAAAAAGAAAGTTGAGGATAGTCAATTATGCGCATTTGATTTACTCGCATCCTTAGCGGGCAAGCTATTGCAGGAGAGTGAAAGTTCTGCTTCTAGCAA TGCATCCGAAGCAAATGATCAACCTATAATTGGTGGTGGTGGTGTGAAATGTGAGCAAGCTGAAGAAAGACCATTGAAAGCAGAATGCCTTGATCATGGA AGTTGTGGAGAAAGTGCTTTTGTCACCGGGTTTACCTCGCCAAACAGTGATCAAAAGTGCCTTCTAAATGCTTTTCCACATGCTGAGAGCTGTTCCATTT TGGAGCGCTCTTCAATGATCTCAAATTCTAATTCCTCAGAGAAAGTTGGTGCTGATTTGAAGACTGTGATTTGCAAAAGCAAGAGCGTGTGTGAAAATTT CACTGGTAAAGTTGAGGGCTCTTTTGATTCTAGGGTGTCTTGTGATGGATATGTAGACAATGGGTTTAGGAGACAACAAGGTGGTGATGGGCTAGATACT GGAGGTTTGACTGCTGAGAATGCTTGCAGTTTGAAGGATCCGATGGAAATGTGTATGAAATTTCCCGCATTGATTAAACCAGACAATGATGTCGAATTGC CATCACGCAGGGAACCAGTTCCTAATGCTTCTATTCCAAGGCGTAGGAATGATACTAAATTAGGTGTTAGAGATGACGACCTAAACTTTTCTAGGTGTAA AAAGTTGTTAACTAAGCCAAAGGCTTTTAGGCCTCCACAACGAATTGGAGACCGAAGAATAAGGAAGTTGCTGACTTCCAAATACTGGAAAGTAGCTCCA AAATTGAAGGAATGTGAACTTTCCAAACCTGCATTTTTTGAAGGGGGAATGAAGCCTCACTATCGCAAGAGGAAATTATGTTATAGTCGTGAAAGGTATC AACATGACACTTTTTATAAGAGGAAGTGCACTGACCGTAGTGTAGTTATGACTTCTGATGGAGGGTTCAGCAGTGAAAGTGTTTGCAATTCACCTGATAA GAGCTTGACTGGAGACAAGAATGGCACAGCCGTAATGCTTCATGGAGCAAATGGGGTATCGTCTTCGGTTATAGGTCATCAATCACCCTTTCACTCCAAG GATTCTCATGTGAAGTTAAGCATTAAGTCCTTCAGAGTTCCAGAGCTTTTCATTGAGATCCCAGAAACTGCAACTGTTGGTTCACTGAAGAGAACTGTGC TGGAGGCTGTGAGTGCTGTACTTGGAAGTGGTTTACGAGTTGGGGTGCTTCTTCATGGAATGAAGGTTAGGGATGACAATAGAACCCTATTGCAGACTGG TATGACTTCTAAAGAGAATCTTGATACCCTGGGTTTCTCATTGGAGCCTATTCCTGTGCAAGCTCCTCCACCCTTATGCACAGAAGATCCTGCACTATTA CCATGTGACACATCTCAACTTATATCAAGTTCTCCGACCACTCCTATTATAGATTCAGGAATTTCTGATGCCTTACCTGATCCTCCTCCATCGACTAATT TGGACACTAACACTGAAAGTAATCATGAATCAGTTTCCTCTCATTCTGACATGGTAACTGATGATACACTGTCGGATTCTAGAGCTCTGGTTGCAGTTCC ACCAATTAATGCTGAGGCTCTTGCAATGGTGCCTTTAAACCCGAAATCTAAGCGATCTGAACTTGTACAGCGTCGAACCAGGAGACCATTCTCTGTGTCA GAAGTAGAAGCACTTGTGCATGCAGTTGAGGAAGTTGGAACTGGAAGGTGGCGAGATGTTAAATTGCGTTCTTTTGAAGATGCAGACCATCGCACATATG TGGATTTGAAGGATAAATGGAAGACATTGGTTCACACAGCTCGGATTGCCCCTCAGCAAAGAAGGGGCGAGCCTGTTCCCCAGGAGCTCTTGGACAGAGT CTTGGCTGCTCATGCTTACTGGTCTCAACATCAAGCTAAGCAACATAGCAAGAATCAGGCTGCTATATTAAAGATCACTGTCGCTCATGCTGTTAGAAAT GGAGTTGAAGATAACCACTCAATATGA
AA sequence Show only first row Show all	>Potri.008G057300.16 pacid=42805784 polypeptide=Potri.008G057300.16.p locus=Potri.008G057300 ID=Potri.008G057300.16.v4.1 annot-version=v4.1 MVVKKRQYYGFNGFHMPPVPRAPRSARQRGLSLNKKKVEDSQLCAFDLLASLAGKLLQESESSASSNASEANDQPIIGGGGVKCEQAEERPLKAECLDHG SCGESAFVTGFTSPNSDQKCLLNAFPHAESCSILERSSMISNSNSSEKVGADLKTVICKSKSVCENFTGKVEGSFDSRVSCDGYVDNGFRRQQGGDGLDT GGLTAENACSLKDPMEMCMKFPALIKPDNDVELPSRREPVPNASIPRRRNDTKLGVRDDDLNFSRCKKLLTKPKAFRPPQRIGDRRIRKLLTSKYWKVAP KLKECELSKPAFFEGGMKPHYRKRKLCYSRERYQHDTFYKRKCTDRSVVMTSDGGFSSESVCNSPDKSLTGDKNGTAVMLHGANGVSSSVIGHQSPFHSK DSHVKLSIKSFRVPELFIEIPETATVGSLKRTVLEAVSAVLGSGLRVGVLLHGMKVRDDNRTLLQTGMTSKENLDTLGFSLEPIPVQAPPPLCTEDPALL PCDTSQLISSSPTTPIIDSGISDALPDPPPSTNLDTNTESNHESVSSHSDMVTDDTLSDSRALVAVPPINAEALAMVPLNPKSKRSELVQRRTRRPFSVS EVEALVHAVEEVGTGRWRDVKLRSFEDADHRTYVDLKDKWKTLVHTARIAPQQRRGEPVPQELLDRVLAAHAYWSQHQAKQHSKNQAAILKITVAHAVRN GVEDNHSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Potri.008G057300 [exp]	0	1
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Potri.005G177500 [exp]	2.44	0.8910
					Potri.005G205000 [exp]	3.46	0.9153
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	5.09	0.9170
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	5.74	0.9153
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.015G134600 [exp]	7.00	0.8870	Pt-GA20.2,GA20ox8
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.016G066100 [exp]	7.74	0.9041	Pt-SPP1.2
					Potri.011G146000 [exp]	9.94	0.8827
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	10.39	0.9122
AT2G30140			UDP-Glycosyltransferase superf...		Potri.001G281900 [exp]	12.80	0.8514
AT4G38810			Calcium-binding EF-hand family...		Potri.004G166900 [exp]	18.65	0.8826

Compare expression of checked genes

Potri.008G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.