Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13840 706 / 0 FZR3 FIZZY-related 3 (.1.2) AT4G22910 526 / 0 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT4G11920 508 / 3e-178 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT4G33260 320 / 5e-105 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT4G33270 320 / 6e-105 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 313 / 9e-103 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G27080 308 / 9e-100 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G26900 304 / 1e-98 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27945 274 / 3e-87 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 78 / 5e-15 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202100 [exp] 856 / 0 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.003G119500 [exp] 515 / 1e-180 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.001G112700 [exp] 507 / 1e-177 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.019G021800 [exp] 329 / 2e-108 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 329 / 2e-108 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 324 / 3e-106 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 318 / 5e-104 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 290 / 5e-93 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 81 / 4e-16 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040282 [exp] 704 / 0 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10001192 [exp] 490 / 2e-170 AT4G22910 734 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10024482 [exp] 488 / 8e-170 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10023401 [exp] 374 / 6e-126 AT5G13840 546 / 0.0 FIZZY-related 3 (.1.2) Lus10037593 [exp] 330 / 7e-109 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 330 / 9e-109 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 332 / 8e-105 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 296 / 2e-95 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 283 / 3e-91 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10043009 [exp] 281 / 2e-89 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G057500.2 pacid=42807141 polypeptide=Potri.008G057500.2.p locus=Potri.008G057500 ID=Potri.008G057500.2.v4.1 annot-version=v4.1 ATGGATTCAACACCAAGAAGAAAGAGTGGCCTGAACCTCCCATCTGGGATGAATGAGACTTCTTTAAGACTAGAGACCTTTTCCTCTTCCAGTTCTTTTA GAGCAGTAACATGCGTATCATCACCCAGAGCAATATCAAGCTTATCTTCACCCTCGAAAACCTCATCTTGTAGTGATAGATTCATACCTTGCAGATCATC TTCAAGGCTCCACACTTTTGGACTCGTAGAGAAAGGATCTCCTGTTAAAGAAGGAGGCAACGAAGCTTATGCAAGGTTACTGAAATCTGAGCTTTTCGGG TCTGATTTTGGTTCCTTTTCTTCTCCTGCAGGTGGTCAAGGAGGATTGAGTAGCCCTAACAAGAATATGTTGAGGTTCAAGACTGATCATTCGGGGCCTA ATTCGCCGTTTTCTCCTTCAATCTTGGGACACGATAGTGGGATTTCTAGTGAGTCTTCTACTCCTCCTAAGCCACCAAGAAAAGTCCCCAAAACACCTCA TAAGGTTTTGGATGCCCCGTCACTTCAAGACGACTTCTATCTGAATCTTGTGGATTGGTCCTCGCAGAATGTACTCGCTGTTGGGTTGGGAACTTGTGTC TATTTATGGACCGCATCAAATAGTAAAGTGACCAGGTTGTGTGATTTAGGGCCTAATGACAGTGTATGCTCTGTGCAATGGACCCGGGAAGGCTCATACA TATCAGTTGGTACACATCTTGGTCAAGTTCAGGTGTGGGATGGAACACAGTGCAAGAGGGTCCGAACCATGGGAGGGCATCAAACAAGAACAGGTGTCTT GGCTTGGAACTCTAGGACACTAGCATCAGGAAGCAGGGACCGCCATATACTTCAGCATGATCTTCGAATTTCCAGTGACTATGTCAGCAAACTTATTGGT CACAAATCTGAGGTATGTGGCTTAAAATGGTCACATGATGACAGGGAACTTGCATCAGGTGGAAATGATAATCAGCTCTTGGTATGGAATCAGCACTCCC AGCTACCAATTTTGAAACTGACTGAACACACAGCTGCTGTCAAGGCCATTGCTTGGTCACCCCACCAGAGTGGCCTTCTTGCATCTGGAGGTGGAACCGC TGATAGATGTATTCGCTTTTGGAACACCACCAATGGTCATCAATTAAACCATGTTGACACAGGAAGCCAGGTGTGCAATCTAGCTTGGAGCAAGAATGTT AATGAGCTGGTCAGCACTCATGGGTACTCCCAGAATCAAATTATGGTGTGGAAATATCCATCATTATCCAAGGTTGCAACTCTAGTTGGTCACAGTTTGC GAGTACTCTATCTTGCCATGTCTCCTGATGGTCAGACAATAGTAACTGGAGCAGGGGATGAGACATTGCGGTTTTGGAACGTCTTCCCCTCTATGAAAAC ACAGACACCAGTGAAAGATACAGGCCTTTGGTCATTAGGACGAACCCAGATTCGGTGA
AA sequence Show only first row Show all	>Potri.008G057500.2 pacid=42807141 polypeptide=Potri.008G057500.2.p locus=Potri.008G057500 ID=Potri.008G057500.2.v4.1 annot-version=v4.1 MDSTPRRKSGLNLPSGMNETSLRLETFSSSSSFRAVTCVSSPRAISSLSSPSKTSSCSDRFIPCRSSSRLHTFGLVEKGSPVKEGGNEAYARLLKSELFG SDFGSFSSPAGGQGGLSSPNKNMLRFKTDHSGPNSPFSPSILGHDSGISSESSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCV YLWTASNSKVTRLCDLGPNDSVCSVQWTREGSYISVGTHLGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRTLASGSRDRHILQHDLRISSDYVSKLIG HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQLPILKLTEHTAAVKAIAWSPHQSGLLASGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWSKNV NELVSTHGYSQNQIMVWKYPSLSKVATLVGHSLRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTQTPVKDTGLWSLGRTQIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.008G057500 [exp]	0	1
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Potri.017G055800 [exp]	1.41	0.7796
AT4G35240			Protein of unknown function (D...		Potri.002G011700 [exp]	7.74	0.7383
AT2G47010			unknown protein		Potri.002G187700 [exp]	19.28	0.6794
AT5G05010			clathrin adaptor complexes med...		Potri.001G293150 [exp]	19.89	0.6434
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G049700 [exp]	22.51	0.7461
AT3G12530		PSF2	PSF2 (.1.2)		Potri.010G203600 [exp]	30.03	0.7234
AT2G22610			Di-glucose binding protein wit...		Potri.002G110600 [exp]	30.44	0.7274
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	31.44	0.7020
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	33.64	0.7414	VLN1.1
AT1G06330			Heavy metal transport/detoxifi...		Potri.018G150200 [exp]	50.06	0.6648

Compare expression of checked genes

Potri.008G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.