Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39710 607 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G02190 511 / 1e-180 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT1G66180 237 / 2e-73 Eukaryotic aspartyl protease family protein (.1) AT5G37540 235 / 1e-72 Eukaryotic aspartyl protease family protein (.1) AT2G03200 146 / 7e-39 Eukaryotic aspartyl protease family protein (.1) AT1G01300 144 / 3e-38 Eukaryotic aspartyl protease family protein (.1) AT3G25700 129 / 5e-33 Eukaryotic aspartyl protease family protein (.1.2) AT3G61820 129 / 1e-32 Eukaryotic aspartyl protease family protein (.1) AT3G54400 122 / 9e-31 Eukaryotic aspartyl protease family protein (.1) AT1G25510 116 / 3e-28 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201400 [exp] 775 / 0 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 582 / 0 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 244 / 2e-76 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 238 / 1e-73 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 223 / 2e-71 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 147 / 2e-39 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 142 / 1e-37 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 142 / 3e-37 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 141 / 5e-37 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002707 [exp] 626 / 0 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004713 [exp] 621 / 0 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 615 / 0 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 582 / 0 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024375 [exp] 565 / 0 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 303 / 1e-102 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 236 / 1e-70 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 151 / 2e-40 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 134 / 2e-34 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003279 [exp] 129 / 1e-32 AT5G33340 296 / 2e-96 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.008G058000.2 pacid=42807199 polypeptide=Potri.008G058000.2.p locus=Potri.008G058000 ID=Potri.008G058000.2.v4.1 annot-version=v4.1 ATGGCTTTTCTTCAGCTTCTCGTTCAACTATTCATTTCCTTCATTTTATTGCAATCCAAGCACTGTCTCTCTTCAAACCAACCACCAATAGTATTAGCTC TAAGAACCCAAAAGCACCGTACTCCTATCTCTACGCCAAGACTCTTCTCCACCACCTCAAAAACCACGGACAAGCTGTTATTTCACCACAACGTTACCCT CACCGTCTCTCTCACAGCTGGTACACCCCTGCAAAACATTACAATGGTCCTGGACACAGGGAGTGAGCTTTCTTGGCTCCATTGCAAAAAAGAACCAAAC TTTAACTCAATTTTTAATCCCCTTGCCTCCAAAACATACACTAAAATTCCCTGCTCTTCACCAACCTGCGAGACCCGAACCCGTGACCTACCCCTACCCG TTTCCTGCGACCCGGCCAAGCTCTGCCACTTCATCATCTCCTACGCGGATGCCTCCTCCGTCGAAGGAAACCTAGCATTTGAAACTTTCCGGGTCGGATC GGTGACGGGACCTGCAACCGTTTTCGGGTGCATGGATTCGGGTTTTAGCTCCAATTCAGAGGAAGATGCGAAGACAACCGGGTTAATGGGCATGAACCGT GGTTCATTATCATTCGTGAACCAGATGGGGTTTCGAAAATTCTCGTATTGCATATCGGATCGCGACTCGTCCGGTGTTTTGCTTCTCGGGGAAGCCAGTT TCTCGTGGCTTAAACCATTAAATTACACTCCTTTGGTTGAAATGTCGACCCCGTTACCCTATTTTGATCGGGTCGCTTACTCGGTTCAGCTCGAGGGAAT AAGGGTAAGTGACAAAGTTTTGTCTTTGCCCAAATCGGTGTTTGTGCCGGACCATACCGGTGCTGGTCAAACTATGGTGGACTCAGGTACCCAATTCACG TTTTTGTTGGGTCCGGTTTACAGTGCTCTAAAACAGGAATTTCTGTTGCAAACGAAAGGGGTTTTAAGAGTTTTAAATGAACCTCGTTACGTGTTTCAAG GAGCAATGGATCTGTGTTATTTGATTGAACCGACTCGGGCTGCTTTGCCAAATCTACCGGTTGTTAACTTAATGTTTAGAGGAGCCGAGATGAGTGTATC GGGTCAAAGGTTGCTGTATCGGGTTCCGGGTGAAGTTAGAGGGAAAGATTCAGTGTGGTGCTTTACTTTTGGAAACTCTGACTCGTTGGGAATTGAGTCC TTTGTGATTGGTCATCATCAACAACAAAATGTTTGGATGGAGTATGATCTTGAAAAATCTAGGATTGGATTTGCTGAGGTTAGGTGTGATCTTGCTGGTC AACGGCTTGGCTTGGATGTCTAA
AA sequence Show only first row Show all	>Potri.008G058000.2 pacid=42807199 polypeptide=Potri.008G058000.2.p locus=Potri.008G058000 ID=Potri.008G058000.2.v4.1 annot-version=v4.1 MAFLQLLVQLFISFILLQSKHCLSSNQPPIVLALRTQKHRTPISTPRLFSTTSKTTDKLLFHHNVTLTVSLTAGTPLQNITMVLDTGSELSWLHCKKEPN FNSIFNPLASKTYTKIPCSSPTCETRTRDLPLPVSCDPAKLCHFIISYADASSVEGNLAFETFRVGSVTGPATVFGCMDSGFSSNSEEDAKTTGLMGMNR GSLSFVNQMGFRKFSYCISDRDSSGVLLLGEASFSWLKPLNYTPLVEMSTPLPYFDRVAYSVQLEGIRVSDKVLSLPKSVFVPDHTGAGQTMVDSGTQFT FLLGPVYSALKQEFLLQTKGVLRVLNEPRYVFQGAMDLCYLIEPTRAALPNLPVVNLMFRGAEMSVSGQRLLYRVPGEVRGKDSVWCFTFGNSDSLGIES FVIGHHQQQNVWMEYDLEKSRIGFAEVRCDLAGQRLGLDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39710			Eukaryotic aspartyl protease f...		Potri.008G058000 [exp]	0	1
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G001000 [exp]	6.24	0.8297	Pt-ARR5.4
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Potri.009G153600 [exp]	14.69	0.8244
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.001G057400 [exp]	26.72	0.7939	PHK3,AHK3.1
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Potri.019G112000 [exp]	27.98	0.7665
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	32.24	0.8012
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	35.21	0.7951
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.002G188100 [exp]	43.26	0.7843
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.008G071700 [exp]	43.88	0.8171
					Potri.010G219300 [exp]	48.49	0.8206
					Potri.006G263350 [exp]	51.61	0.8027

Compare expression of checked genes

Potri.008G058000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.