Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06090 704 / 0 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11430 693 / 0 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT2G38110 424 / 7e-145 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT3G11325 397 / 7e-136 Phospholipid/glycerol acyltransferase family protein (.1) AT1G01610 392 / 5e-132 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 390 / 1e-131 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G06520 382 / 3e-127 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G02390 318 / 3e-103 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 308 / 3e-99 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201200 [exp] 862 / 0 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.006G198100 [exp] 476 / 5e-165 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 471 / 3e-163 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 454 / 1e-156 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 454 / 2e-156 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.005G202200 [exp] 394 / 2e-132 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.014G085500 [exp] 389 / 5e-131 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.002G192600 [exp] 334 / 7e-109 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004711 [exp] 696 / 0 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010741 [exp] 455 / 9e-157 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 447 / 1e-153 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 412 / 3e-140 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10020767 [exp] 394 / 9e-133 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010934 [exp] 384 / 4e-128 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 379 / 3e-126 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10002421 [exp] 324 / 2e-105 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10004833 [exp] 320 / 4e-105 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10001449 [exp] 322 / 3e-104 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G058200.1 pacid=42806015 polypeptide=Potri.008G058200.1.p locus=Potri.008G058200 ID=Potri.008G058200.1.v4.1 annot-version=v4.1 ATGGATTCAGTTGTTTCGGAGCTCGAGGGAACTCTTCTAAAAGGCGGAGACCCCTTCTCTTATTTCATGCTAGTAGCATTTGAGGCATCGGGTTTGCTTC GTTTTGCCTTGTTATTGATCTTATGGCCTGTGATTGGGTTACTGGATATGTTAGGGATGGGAGAATATGGGCTCAAGCTAATGGTCTTTGTTGCCATTGC GGGTGTTAGTGAATCGGAGATTGAGTCGGTAGCAAGAGCAGTTTTGCCAAAGTTTTACTTGGATGATATTGACATGGAAGCATGGAAGGTGTTTAGCTCA TATGATAAAAGAGTTGTAGTGACTAAGATGCCAAGGATCATGGCTGAGAGGTTTGTGAAGGAGCATTTGCGAGCCGATGAGGTTATTGGAAGTGAACTTG TGATTAGCCGGTTTGGGTTCGCCACAGGATTTGTCAAGGGCAACATTATTGATTCTTATATTTCGAGTCGAGTCGCCAAATTGTTTATTGACGAAAAACC TTGTCTTGGACAAGGAAGGGTTACTTCTTCATTCCTATCTTTATGCAAGGAACAAATACACCCCCCATGCATGACCAATGATCAAAAGCAGCATGATCAT CAGCTCGTCCGCCCTCTCCCGGTCATCTTTCATGATGGCCGCCTAGTCAAGCGTCCGACACCGTCCATGGCTCTCCTAATCATCCTATGGATGCCTATAG GCATCGTCCTCGCAGCAGTTCGGATTCTAGTGGGAATTATGCTACCGATGTGGGCTAAACCTTACTTGTCCAAGATGTTGGGTGGCAAAGTTATTGTCAA AGGCAAACCACCACCTCCCGCGTCCAGTGGCAATAGCGGTGTGCTGTTTGTTTGCACTCACCGAACCCTGATGGACCCTGTCGTCTTATCTACTGTGCTA AGACGTAAAATCCCAGCAGTCACATACTCCATTTCAAGATTATCAGAGATCTTATCGCCAATCCCCACCGTCCGATTAACAAGGATTCGCGATGTGGATG CTGATCAAATCAAACGAGAACTGGCCAGAGGTGACCTTGTGGTTTGTCCAGAAGGAACAACTTGTAGAGAACCATTCCTATTGAGATTTAGTGCACTCTT TGCTGAATTAACTGACCAAATAGTGCCAGTGGCAATGAACTATAGGGTTGGTTTTTTCCATGCAACTACAGCTAGAGGATGCAAAGCTTTGGACCCAATA TTCTTCTTCATGAATCCTAGACCAGTTTACGAGGTGACTTTCTTGAGTCAGTTGCCAGTAGAAGCTACGTGCTCATCTGGTAAAAGCCCACATGATGTTG CAAATTATGTCCAAAGAATCTTAGCAGCTACGTTAGGATTTGAATGCACGAACTTCACCAGGAAGGACAAGTACAGGGTTCTTGCTGGGAATGATGGATC CGTATCGCACACCTCCTTTGCTAATCAACTTAAGAAGGTGGTGAGCACGTTCAAGCCCTTTTTTCACTAG
AA sequence Show only first row Show all	>Potri.008G058200.1 pacid=42806015 polypeptide=Potri.008G058200.1.p locus=Potri.008G058200 ID=Potri.008G058200.1.v4.1 annot-version=v4.1 MDSVVSELEGTLLKGGDPFSYFMLVAFEASGLLRFALLLILWPVIGLLDMLGMGEYGLKLMVFVAIAGVSESEIESVARAVLPKFYLDDIDMEAWKVFSS YDKRVVVTKMPRIMAERFVKEHLRADEVIGSELVISRFGFATGFVKGNIIDSYISSRVAKLFIDEKPCLGQGRVTSSFLSLCKEQIHPPCMTNDQKQHDH QLVRPLPVIFHDGRLVKRPTPSMALLIILWMPIGIVLAAVRILVGIMLPMWAKPYLSKMLGGKVIVKGKPPPPASSGNSGVLFVCTHRTLMDPVVLSTVL RRKIPAVTYSISRLSEILSPIPTVRLTRIRDVDADQIKRELARGDLVVCPEGTTCREPFLLRFSALFAELTDQIVPVAMNYRVGFFHATTARGCKALDPI FFFMNPRPVYEVTFLSQLPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGSVSHTSFANQLKKVVSTFKPFFH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06090		ATGPAT7, GPAT7	glycerol-3-phosphate acyltrans...		Potri.008G058200 [exp]	0	1
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	1.00	0.9910
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	2.44	0.9885
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	2.44	0.9855
AT1G68850			Peroxidase superfamily protein...		Potri.008G110600 [exp]	3.46	0.9849
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	4.58	0.9786
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	5.00	0.9799
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.008G076400 [exp]	5.19	0.9703
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	5.47	0.9797
AT5G22810			GDSL-like Lipase/Acylhydrolase...		Potri.009G151000 [exp]	6.32	0.9730
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.015G046800 [exp]	6.32	0.9702

Compare expression of checked genes

Potri.008G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.