Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29200 864 / 0 APUM1 pumilio 1 (.1) AT2G29140 845 / 0 APUM3 pumilio 3 (.1) AT2G29190 842 / 0 APUM2 pumilio 2 (.1.2) AT3G10360 592 / 0 APUM4 pumilio 4 (.1) AT3G20250 471 / 3e-150 APUM5 pumilio 5 (.1) AT4G25880 432 / 7e-137 APUM6 pumilio 6 (.1.2.3) AT1G22240 185 / 7e-50 APUM8 pumilio 8 (.1) AT1G78160 178 / 1e-46 APUM7 pumilio 7 (.1) AT5G56510 169 / 8e-44 APUM12 pumilio 12 (.1) AT4G08840 154 / 4e-39 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201100 [exp] 1571 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 848 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 820 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G036500 [exp] 707 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 615 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 516 / 3e-167 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 493 / 2e-158 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 485 / 2e-155 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 198 / 1e-52 AT5G56510 497 / 4e-168 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002708 [exp] 1207 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 872 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 872 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 767 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 758 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 719 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 681 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 676 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 494 / 1e-159 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 496 / 4e-159 AT3G20250 880 / 0.0 pumilio 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat CL0020 [poplar] [flax] PF07990 [poplar] [flax] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Potri.008G058300.1 pacid=42808640 polypeptide=Potri.008G058300.1.p locus=Potri.008G058300 ID=Potri.008G058300.1.v4.1 annot-version=v4.1 ATGATCACTGACACATATTCAAAGGTTTTGCCTGATATCTCAAAGCGATCAATGCTGAAAAACGAGGATTTGAGCAAGCTAATTAGAGAGCAAAGGTTGC AACAAGAGGCAACAAGTGAAATAGAGAAAGAACTCAATATTTATCGAAGTGGTTCAGCCCCGCCTACAGTAGAAGGTTCTTTAAGTTCTATTGGAGGCTT ATTTGATGGTACAGGGATTCCTGGTATCAAAAATAGCAATAGAGGTGGTTTTTCGAGTGAAGAGGTCCTAAGGTCTGACCCAGCTTATGTTAATTATTAT TATTCGAATGTGAACTTGAATCCAAGATTGCCTCCTCCATCATTGTCAAAGGAGGATTGGAGATTTGCACAGAGATTACATGGAAGTGGCGGTGGTTCTA ATTCTGTGGTTGGGGATAGAAGGAGGGGAAGTAGAGGCGGCGAAAATGAAGGGCATAGGTCACTTTTTGCAGTGCAGCCAGGGTTTGGAGGAGGAATGGA GGAGAATGGGAATGAGAATGGAGTGGAGTGGGGAGGAGATGGGCTTATTGGGTTGCCGGGATTGGGGCTGGGAAGTAGGCAAAAGAGCATTGCAGAGATC ATTCAGAATGATATGGGTCATGCAAACCCGATCTCAAGGCACCCTTCACGTCCTGCTAGCCGCAATGCATTCGATGATGATATGGAAACTTCTGAAGCTC AGTTTAGTCAGCTGCATGGTGATTTGGCATCCCTTGATGCTCTACGCTCCAGTTCAAACAAACAGGGCATGTCTGCAGTTCAAAACATTGGTGCATCAGC TTCTCATACCTACGCTTCTGCTTTAGGTGCCACCTTGTCTCGAAGCACCACACCTGACCCTCAGCTTGTAGCGAGGGCTCCTAGCCCTCGCATTCCACCC ATTGGAGGAGGTAGGACCAATTCCATGGATAAAAGAGATGTGAGTGGTTCACACTCATTTAATGGCATCTCAACAAGCTTCAATGATTCTGAGCTCGTAG CTGCATTGTCTGGGTTGAAGATGTCAACAAATGGTTTAGTTGATGAAGAGAACCACTCACAGTCACGAAGCCAACATGAAATTGATGATCGCCATAACCT GTTCAATTTGCAAGGTGATCAAAACTATGTCAAGCAACAATCATATTTAAACAAGTCATCTGCTAGCTCAAACCTTAAATTACCCTCAACTCTGACTCTG AGTGGTCGAGGAGGCTCTCCTTCTAATCACCAGAATGCAGATAACATGAATTCCCCATATGCTAACTATGGCTTCAGTGGGTATCCTGTGAATCCTTCAT CGCCGTCCATGATAGGAAGTGCTCTTGCGAATGGGAGTCTGCCACCTTTGTTTGGAAATGCTGCTGCTGCTGCAATGGCTGGAAGTGGGTTGGATTCTCA AGCACTAGGTGCAATAGGGCCGAACTTAATGGCTTCAGCAGCAGAATTGCAAAATCTTAGTAGATTTGGGAATCAAACTGCAGGTGTGCCTCTTGTGGAC CCATTATATCTTCAGTACTTGAGATCAGATGAGTATGCAGCTGCCCAGCTTGCAACTGCCCAGCTTGCAGCTCTCAATGAACCCATGCTGGACAGGGAGT ATGTTGGTAATGCATATGATCTCCTCCAAAAGCTTCAATTAGAGACATTGCTGTCCTCTCAAAATTCACAGTATGGTGTTCCATACCTTGGCAAATCTGG TAGCTTGAACCATAATTACTATGGAAACACAGGATTTGGTCTTGGCATGTCCTATTCTGGAAGCCCATTAGGGGGGCCCGTTCTTCCAAATTTGCTTGCT GGATCTGGTGGTCCTGTGAGGCACAGTGAACGGAATATGCGTTTTTCTCCTGGGATGAGGAATCTGTCTGGGGGTGTCATGGGATCATGGCATTCAGAAG CTGGTAGTAACCTGGATGAAAGTTTTCCTTCCTCTTTACTGGATGAGTTCAAAAGCAATAAAACTAAATGTTTTGAACTGTCAGAAATTGCTGGTCATGT TGTTGAGTTCAGCGCTGATCAGTATGGGAGCCGATTCATTCAACAGAAGCTTGAGACTGCCACGGCAGAAGAGAATAACATGGTTTTTGATGAAATTATG CCCCAAGCCCTTTCACTAATGACTGATGTTTTTGGTAATTATGTGATTCAGAAGTTTTTTGAGCATGGATCTGCATCCCAAATAAGAGAACTGGCTGATC AGCTAACTGGCCATGTGCTGACCCTTAGCCTTCAAATGTATGGCTGTCGTGTTATCCAAAAGGCTATAGAAGTGGTTGAACTGGACCAGCAGACTAAAAT GGTCACAGAGCTTAATGGTCATATCTTGCGATGTGTACGTGATCAGAATGGAAACCATGTCATTCAGAAGTGTATTGAATGTGTACCTGAAGATGCCATA CAGTTTATTGTTTCTACATTTTATGATCAAGTTGTGACGCTGTCCACTCATCCATATGGGTGCCGTGTGATACAGAGAGTGCTGGAGCACTGCCATGACA CCAAAACCCAGCGTATAATGATGGATGAGATTTTGCAGTCTGTTTGCATGTTGGCACAAGACCAATATGGAAATTATGTTGTACAGCATGTCCTGGAGCA TGGGAAACCACATGAGCGTTCAGCAATAATAAAGAAATTAACTGGGCAGATAGTTCAAATGAGCCAGCAGAAGTTTGCCTCCAATGTAATAGAGAAATGC TTAACTTTTGGCACTCCTGCAGAACGTCAGGCCCTGGTGGATGAGATGCTTGGCACCACTGATGAGAATGAGCCTCTACAGGCCATGATGAAAGATCAGT TTGCAAATTATGTTGTACAGAAAGTGCTGGAAACTTGTGATGACCAGCAACTTGGACTCATACTCAGTCGAATAAAAGTTCACTTAAATGCTCTGAAGAA GTATACTTATGGGAAACATATAGTTCTGCGTGTAGAGAAACTTGTTGCAGCTGGAGAGAGGAGAATTAGCTTCCTTACTCTGAATCCAGCTACTGCATAG
AA sequence Show only first row Show all	>Potri.008G058300.1 pacid=42808640 polypeptide=Potri.008G058300.1.p locus=Potri.008G058300 ID=Potri.008G058300.1.v4.1 annot-version=v4.1 MITDTYSKVLPDISKRSMLKNEDLSKLIREQRLQQEATSEIEKELNIYRSGSAPPTVEGSLSSIGGLFDGTGIPGIKNSNRGGFSSEEVLRSDPAYVNYY YSNVNLNPRLPPPSLSKEDWRFAQRLHGSGGGSNSVVGDRRRGSRGGENEGHRSLFAVQPGFGGGMEENGNENGVEWGGDGLIGLPGLGLGSRQKSIAEI IQNDMGHANPISRHPSRPASRNAFDDDMETSEAQFSQLHGDLASLDALRSSSNKQGMSAVQNIGASASHTYASALGATLSRSTTPDPQLVARAPSPRIPP IGGGRTNSMDKRDVSGSHSFNGISTSFNDSELVAALSGLKMSTNGLVDEENHSQSRSQHEIDDRHNLFNLQGDQNYVKQQSYLNKSSASSNLKLPSTLTL SGRGGSPSNHQNADNMNSPYANYGFSGYPVNPSSPSMIGSALANGSLPPLFGNAAAAAMAGSGLDSQALGAIGPNLMASAAELQNLSRFGNQTAGVPLVD PLYLQYLRSDEYAAAQLATAQLAALNEPMLDREYVGNAYDLLQKLQLETLLSSQNSQYGVPYLGKSGSLNHNYYGNTGFGLGMSYSGSPLGGPVLPNLLA GSGGPVRHSERNMRFSPGMRNLSGGVMGSWHSEAGSNLDESFPSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATAEENNMVFDEIM PQALSLMTDVFGNYVIQKFFEHGSASQIRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTKMVTELNGHILRCVRDQNGNHVIQKCIECVPEDAI QFIVSTFYDQVVTLSTHPYGCRVIQRVLEHCHDTKTQRIMMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIIKKLTGQIVQMSQQKFASNVIEKC LTFGTPAERQALVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLGLILSRIKVHLNALKKYTYGKHIVLRVEKLVAAGERRISFLTLNPATA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	0	1
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	1.00	0.9271
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	2.44	0.8561
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.012G131000 [exp]	3.31	0.8223	Pt-PRH75.1
AT4G27220			NB-ARC domain-containing disea...		Potri.005G042400 [exp]	4.24	0.8269
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	4.69	0.8569
AT2G24960			unknown protein		Potri.013G025200 [exp]	5.00	0.8005
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	7.41	0.8456	Pt-SPY.1
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.004G134700 [exp]	7.48	0.7995
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	8.36	0.8304	HEN2.1
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	9.16	0.8406	Pt-SPL1.4

Compare expression of checked genes

Potri.008G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.