Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 714 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 572 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 566 / 0 RLK receptor lectin kinase (.1) AT4G02420 554 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 547 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 538 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 529 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 505 / 1e-171 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 499 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 491 / 2e-166 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200600 [exp] 898 / 0 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 721 / 0 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 622 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 622 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 613 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 606 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 601 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G036100 [exp] 593 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 588 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040276 [exp] 745 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 681 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 677 / 0 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 591 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 580 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 573 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10001564 [exp] 572 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 570 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 568 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 562 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.008G058400.1 pacid=42807864 polypeptide=Potri.008G058400.1.p locus=Potri.008G058400 ID=Potri.008G058400.1.v4.1 annot-version=v4.1 ATGTCCCAAAAGCTCACACTTTTCTTGTTTCTCATTTTCCTTGCAAACCAAAACCATGTTCTTACACAGCTTGATGATCTGTACTTCCAAGGATTCAATC ATGTTAGAAACAACATGAGCCTAAATGGTGCTGCTGAGATTGAAAAGAATGGCTTATTGAGTTTAACAAACAATAGTAAAAGCATACTAGGCCATGCATT TTACTCGCATCAAATCAAGTTCAAGAACTCTACCAGTGGAAAAGCATTCTCCTTCTCAACCGCCTTTGTTTTTGCTGTTGTCCCTAAGTATCCAAATCTA GGTGGTCATGGCCTTGCTTTCACCCTCTCTACTTCAAACGAGCTGCCTGGTGCTTTTCCGAGGAAGTATCTGGGTCTCCTCAATACAACCGTCGCTGGTA GCTTCTCCTATCACATTTTTTCAGTTGAATTTGACACACATAAAGATTATGATTTTTTTGATATAAATGATAATCATGTTGGTGTTAATATCAATAGCAT GATATCAAACAAATCGGTTCCTGCAGCATATTTTCTTCTTAATTCAGAAAAGGAAGAATTGGATCTCACTAGTGGTAATCCCATTCAAGCATGGGTTGAT TATGATTCAGTCAAGAATCAATTAGAGGTTAGGCTTTCACCTTCTTCCACAAAACCGATTTATCCTATCTTGTCTATTGATATAGACCTCTCTAGTATTC TCAATGATTCTATGTATGTCGGTTTCTCTTCGTCAACTGGTATGCTCACAAGCACACATTATGTTCTTGGATGGAGTTTCAGTGTAAATGGAGAGGCTAA ATCTTTCTCTATGTCTTCTCTTCCTTCTCTTCCTGAGACTAAAGATCTCTTGGTACTTGTTGTCTGCGTCTCAGTTGGGTCTACTTTTGTCATAATCTTG GGGATTGCTGTATCCTTTTATCTTGTTAGAAAGATTAAAGATGCAGATATGATCGAGGGATGGGAGCTACAAGTTGGTCCTCGCAGATTCTCTTATCAAG AACTCAGGGAAGCAACAAGGGGTTTTAGAGAAAAGGAGCTGCTTGGCTTTGGTGGATTTGGTAAAGTTTACAAAGGAACCCTGCCAAATTGTGGCACTCC AATAGCAGTGAAGAGATTTTGTCACGAATCTAAACAAGGTTTGAGGGAATTTTCGACTGAGATTGCTAGTATTGGCCGTCTCCGCCACAAAAATTTAGTT CGTTTACTAGGGTGGTCTCGCCTACGAGGTGAACTGCTGCTTGTCTATGATTTCATGCCTAATGGGAGCTTAGACAAGTACATATTTGAGGAGCCTAAAA CCATTCTCAAATGGGAACAAAGGTTCAAGATTGTCAAGGATGTTGCTTCGGGCCTTCTGTATTTGCATGAAGAATGGGAGCAGACTGTGATTCACAGAGA CATAAAGGCAGGGAATGTGTTGCTAGATTCCGAACTAAATGGAAGACTTGGCGACTTTGGTCTTGCCAAGTTATATGAGCGAGGCTCAAATCCCATCACC ACCAAGGTGGTCGGCACATTGGGTTACTTGGCACCCGAGCTGACAAAAACAGGAAAGCCTACAACAAGTTCAGATGTGTTTGCCTTTGGTGCACTTTTGC TTGAAGTGATTTGTGGAAGGAGACCTATTGAGCCTAAAGCACTGCCTGAAGAGCTCATTTTGGTAGACTGGGTATGGGATAAGTGGAAAAGTGGTGCAAT TCTTGATGTAGTGGACCCGAGATTAAATGGCGAGTTTGACGAGACTGAGGCTGTTCTTCTGCTTAAATTGGGGCTCATGTGTTCTAACTATGTCCCGAGA GCAAGGCCTTTAATGAGAAAGATTGTGAGGTATTTGGAGGGAGAAGTGGCATTGCCTGAGTTGGTTGCTGCCCCAGATGTCTATGATGGGGAAAATGCTG ATGCAAATACTGATAGTGGTGATGAGTGTAAGGATCATATGTATTTTTATCCACAATCAACATAA
AA sequence Show only first row Show all	>Potri.008G058400.1 pacid=42807864 polypeptide=Potri.008G058400.1.p locus=Potri.008G058400 ID=Potri.008G058400.1.v4.1 annot-version=v4.1 MSQKLTLFLFLIFLANQNHVLTQLDDLYFQGFNHVRNNMSLNGAAEIEKNGLLSLTNNSKSILGHAFYSHQIKFKNSTSGKAFSFSTAFVFAVVPKYPNL GGHGLAFTLSTSNELPGAFPRKYLGLLNTTVAGSFSYHIFSVEFDTHKDYDFFDINDNHVGVNINSMISNKSVPAAYFLLNSEKEELDLTSGNPIQAWVD YDSVKNQLEVRLSPSSTKPIYPILSIDIDLSSILNDSMYVGFSSSTGMLTSTHYVLGWSFSVNGEAKSFSMSSLPSLPETKDLLVLVVCVSVGSTFVIIL GIAVSFYLVRKIKDADMIEGWELQVGPRRFSYQELREATRGFREKELLGFGGFGKVYKGTLPNCGTPIAVKRFCHESKQGLREFSTEIASIGRLRHKNLV RLLGWSRLRGELLLVYDFMPNGSLDKYIFEEPKTILKWEQRFKIVKDVASGLLYLHEEWEQTVIHRDIKAGNVLLDSELNGRLGDFGLAKLYERGSNPIT TKVVGTLGYLAPELTKTGKPTTSSDVFAFGALLLEVICGRRPIEPKALPEELILVDWVWDKWKSGAILDVVDPRLNGEFDETEAVLLLKLGLMCSNYVPR ARPLMRKIVRYLEGEVALPELVAAPDVYDGENADANTDSGDECKDHMYFYPQST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55550			Concanavalin A-like lectin pro...		Potri.008G058400 [exp]	0	1
AT5G56510		APUM12	pumilio 12 (.1)		Potri.002G120900 [exp]	6.78	0.7796
AT5G22780			Adaptor protein complex AP-2, ...		Potri.009G150300 [exp]	16.27	0.7993
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G086400 [exp]	16.58	0.7528	WRKY13.1
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	38.97	0.7159	SDG916,Pt-CLF.2
AT5G24170			Got1/Sft2-like vescicle transp...		Potri.015G017300 [exp]	97.82	0.7152
AT1G77420			alpha/beta-Hydrolases superfam...		Potri.010G124000 [exp]	99.87	0.6694
AT1G58070			unknown protein		Potri.004G222800 [exp]	116.83	0.6991
AT5G39570			unknown protein		Potri.004G127400 [exp]	184.30	0.6716	LAP1.3
AT5G57460			unknown protein		Potri.006G168200 [exp]	203.69	0.6815
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	209.91	0.6829	ATHB.11

Compare expression of checked genes

Potri.008G058400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.