Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74260 1649 / 0 PUR4 purine biosynthesis 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200200 [exp] 1917 / 0 AT1G74260 2285 / 0.0 purine biosynthesis 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012890 [exp] 1711 / 0 AT1G74260 2323 / 0.0 purine biosynthesis 4 (.1) Lus10030542 [exp] 1689 / 0 AT1G74260 2303 / 0.0 purine biosynthesis 4 (.1) Lus10004706 [exp] 1616 / 0 AT1G74260 2253 / 0.0 purine biosynthesis 4 (.1) Lus10040272 [exp] 395 / 5e-129 AT1G74260 366 / 1e-116 purine biosynthesis 4 (.1) Lus10040273 [exp] 336 / 3e-103 AT1G74260 921 / 0.0 purine biosynthesis 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [poplar] [flax] AIRS_C AIR synthase related protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G058600.4 pacid=42805910 polypeptide=Potri.008G058600.4.p locus=Potri.008G058600 ID=Potri.008G058600.4.v4.1 annot-version=v4.1 ATGCTCTGCTGTCTTTTTTTTTTATTATTTATAGATATACATACACACACTCTTTTCCTGTCTTGCCTCTGTTTTTTTTTCCCATATAGTTTCGTGAGTT TGTACAGGTCCAGTGTAATGGCGGGTACCCGAGAAATCACAGCAGCAACAGAATTCTTGCTTGGTAACAATAGGAAAACCCTGTATGTACAGAGAGATTT GCCTATTAATCGACGGAACCAGTTGCTGTTGGGGATGCTTCGTGGTCATAGGCCTGCGTTTGGTGTATCTGATAAAAGGAGTGTTTCATTGAGGTGTCGT GCGCAATCAAAGCCTAGAGCTTTGGTTTCTGGGGGTGTGACGAGTTCTGTTGATGAGCAGTCAAGTTTAATTGAAAAGCCCGCGCAAGAACTGATTCATT TTTATCGCATTCCGTTGATTCAAGAGAGTGCAACTCTTGAATTACTTAAGTCTGTTCAAACGAAAGTTTCAAATAAGATTGTTGGTTTGCGAACTGAGCA GTGCTTTAATATCGGGATTCGGTCTGGGATTTCAAGCCAGAAGCTTGGGGTTCTTAGGTGGCTTCTACAAGAAACTTATGAGCCCGAGAATTTGGGGACT GAGAGCTTTCTCGAGAAGAAGATGAAGGAAGGAGTGAATGCTGTGATAGTCGAGGCTGGACCCAGGTTGTCTTTTACCACAGCTTGGTCTGCGAATGCTG TGTCAATTTGTCATGCTTGTGGGTTGACAGAGGTTACTAGACTGGAACGGTCAAGGAGGTACTTACTGTACAGTAAGGGTGTGTTGCAAGATTATCAAAT CAATGAGTTTGCTGCAATGGTTCATGATCGGATGACTGAGTGTGTTTATACTCAGAAGCTTACATCTTTCGAAACCAGTGTAGTTCCGGAGGAAGTTCGA TATGTTCCTGTCATGGAGAGGGGTAGAAAAGCATTGGAGGAGATTAATCAGGAGATGGGGCTTGCGTTTGATGAGCAAGATTTACAGTATTATACTAGTT TGTTCAGGGAGGACATCAAGCGGAATCCGACAACTGTGGAATTGTTTGACATTGCACAATCTAATAGCGAGCATAGCAGGCATTGGTTTTTCACTGGGAA GATTATTATAGATGGACAGCCCATGAATAGAACTCTTATGCAGATTGTGAAGAGCACGTTGCAGGCGAATCCAAATAATTCTGTCATTGGTTTCAAGGAC AACTCGAGTGCAATCAAAGGCTTCCCTGTAAAGCAATTGCGGCCAGTTCAGCCCGGCTCAACATGTCCCTTAAATGCAAGCAACCGTGACCTTGATATTT TATTTACAGCCGAGACTCATAATTTCCCGTGTGCAGTGGCACCTCACCCTGGGGCAGAGACAGGTGCAGGGGGTCGAATTAGGGATACTCATGCAACAGG TAGAGGGTCATTTGTTGTTGCATCTACAGCTGGTTACTGCGTTGGGAATCTGAATGTTGAGGGGTCTTATGCGCCATGGGAAGATCATTCTTTCACATAC CCATCAAACTTGGCATCACCTTTGCAGATTCTCATTGATGCTAGCAATGGTGCTTCAGATTATGGAAACAAATTTGGGGAGCCCTTGATTCAGGGCTACA CTAGAACTTTTGGTATGCGACTTCCTAGTGGGGAGAGGCGGGAATGGTTGAAACCAATTATGTTCAGTGGAGGCATAGGGCAAATTGATCACACCCACAT AACGAAAGGGGAACCTGATGTTGGCATGCTGGTTGTAAAGATTGGAGGTCCTGCTTATCGAATTGGAATGGGAGGTGGGGCCGCATCAAGCATGGTGAGT GGCCAGAATGATGCTGATCTTGACTTTAATGCTGTACAGCGCGGAGATGCTGAAATGGCACAGAAACTGTATCGTGTTGTTCGTTCCTGCATTGAGATGG GGGAGAACAATCCAATCATTAGTATCCATGATCAGGGAGCCGGTGGTAACTGTAATGTTGTGAAGGAAATTATATATCCAAAGGGTGCTCAAATTGACAT CCAGGCAATTGTTGTTGGTGATCACACAATGTCTGTTTTGGAGATATGGGGTGCAGAGTATCAGGAGCAAGATGCAATTTTGGTGAAGGCTGAAAGCCGT GACCTCTTGCAATCAATCTGCAAAAGGGAAAGGGTGTCAATGGCTGTTATCGGAACTATTAGTGGCGAGGGACGTGTTGTCTTGGTTGATAGTTCAGCTA CTGAGAAATGTCGTTCAAATGGACTCCCTCCCCCTCCTCCTGCAGTGGATCTTGAGCTTGAGAAAGTTCTTGGGGACATGCCTCAGAAAAGTTTTGAGTT CCACCGGGTGGTTTCTGCACGAGAGCCACTTGATATTGCTCCAGACATCACAGTGATGGATGCTTTAATGAGGGTATTAAGACTTCCATCTGTATGTTCA AAACGATTCTTAACAACAAAAGTGGACAGGTGTGTAACAGGTCTTGTAGCACAGCAGCAAACTGTTGGTCCTCTGCAAATTACACTTGCTGATGTTGCTG TCATTGCTCAGACCTATACTGACTTGACTGGAGGTGCCTGTGCCATTGGGGAACAACCTATCAAAGGTCTGGTTAATCCAAAGGCTATGGCGAGGTTGGC TGTTGGAGAAGCTCTCACAAATCTGGTTTGGGCAAAGATTACTTCTCTTTCTGATGTTAAGTCAAGCGGGAATTGGATGTATGCTGCCAAGCTGAATGGG GAAGGAGCTGACATGTATGATGCTGCCACAGCTCTTTCAGAAGCTATGATTGAACTTGGCATTGCTATCGATGGGGGCAAGGACAGTCTCTCCATGGCAG CCCATGCAGGTGGTGAGATTGTTAAGGCCCCAGGAAATCTCGTTATCAGTGCTTATGTCACTTGCCCTGACATAACAAAAACAATTACCCCTGATCTGAA GTTGAGAGATGAGGGTTTACTTCTTCACATTGATCTGGCCAAGGGAAAGAGGCGCCTGGGTGGATCTGCACTTGCTCAGGCTTTTGACCAAGTTGGCGAT GACTGCCCAGATCTTGACGATGTTTCTTACCTGAAAAAAACTTTCGAGTTTGTGCAGGATCTTATTACTGAAGAAATAATCTCTTCTGGCCATGATATTA GTGATGGTGGGCTACTGGTCTGTGCCCTGGAGATGACATTTGCTGGGAATTGTGGTATTCTTTTGGACTTGATTTCAAAGGGGAGAGCCTCTTTGAAACA GTCTTTGCAGAAGAGCTTGGTCTTGTTCTTGAAGTCAGCAGAAAAAACTTGGATATTGTAA
AA sequence Show only first row Show all	>Potri.008G058600.4 pacid=42805910 polypeptide=Potri.008G058600.4.p locus=Potri.008G058600 ID=Potri.008G058600.4.v4.1 annot-version=v4.1 MLCCLFFLLFIDIHTHTLFLSCLCFFFPYSFVSLYRSSVMAGTREITAATEFLLGNNRKTLYVQRDLPINRRNQLLLGMLRGHRPAFGVSDKRSVSLRCR AQSKPRALVSGGVTSSVDEQSSLIEKPAQELIHFYRIPLIQESATLELLKSVQTKVSNKIVGLRTEQCFNIGIRSGISSQKLGVLRWLLQETYEPENLGT ESFLEKKMKEGVNAVIVEAGPRLSFTTAWSANAVSICHACGLTEVTRLERSRRYLLYSKGVLQDYQINEFAAMVHDRMTECVYTQKLTSFETSVVPEEVR YVPVMERGRKALEEINQEMGLAFDEQDLQYYTSLFREDIKRNPTTVELFDIAQSNSEHSRHWFFTGKIIIDGQPMNRTLMQIVKSTLQANPNNSVIGFKD NSSAIKGFPVKQLRPVQPGSTCPLNASNRDLDILFTAETHNFPCAVAPHPGAETGAGGRIRDTHATGRGSFVVASTAGYCVGNLNVEGSYAPWEDHSFTY PSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPSGERREWLKPIMFSGGIGQIDHTHITKGEPDVGMLVVKIGGPAYRIGMGGGAASSMVS GQNDADLDFNAVQRGDAEMAQKLYRVVRSCIEMGENNPIISIHDQGAGGNCNVVKEIIYPKGAQIDIQAIVVGDHTMSVLEIWGAEYQEQDAILVKAESR DLLQSICKRERVSMAVIGTISGEGRVVLVDSSATEKCRSNGLPPPPPAVDLELEKVLGDMPQKSFEFHRVVSAREPLDIAPDITVMDALMRVLRLPSVCS KRFLTTKVDRCVTGLVAQQQTVGPLQITLADVAVIAQTYTDLTGGACAIGEQPIKGLVNPKAMARLAVGEALTNLVWAKITSLSDVKSSGNWMYAAKLNG EGADMYDAATALSEAMIELGIAIDGGKDSLSMAAHAGGEIVKAPGNLVISAYVTCPDITKTITPDLKLRDEGLLLHIDLAKGKRRLGGSALAQAFDQVGD DCPDLDDVSYLKKTFEFVQDLITEEIISSGHDISDGGLLVCALEMTFAGNCGILLDLISKGRASLKQSLQKSLVLFLKSAEKTWIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	0	1
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	2.44	0.9131
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	3.16	0.9151
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	4.00	0.8995
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	4.24	0.9092
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133340 [exp]	5.00	0.8697
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	7.74	0.8977
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G125951 [exp]	7.74	0.8865
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	7.93	0.8879
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	8.36	0.8940
AT4G27680			P-loop containing nucleoside t...		Potri.012G025351 [exp]	8.66	0.8809

Compare expression of checked genes

Potri.008G058600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.