Plant FIBer expression Database

Potri.008G058800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44920 253 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
AT1G12250 54 / 6e-09 Pentapeptide repeat-containing protein (.1.2)
AT5G55000 48 / 2e-06 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G200000
[exp]
333 / 2e-117 AT2G44920 256 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.003G112900
[exp]
55 / 6e-09 AT1G12250 363 / 1e-128 Pentapeptide repeat-containing protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000520
[exp]
283 / 8e-98 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10002712
[exp]
274 / 4e-94 AT2G44920 287 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10032239
[exp]
56 / 3e-09 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2)
Lus10024602
[exp]
55 / 1e-08 AT1G12250 354 / 1e-123 Pentapeptide repeat-containing protein (.1.2)
Lus10020270
[exp]
40 / 0.001 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0505 Pentapeptide PF00805 Pentapeptide Pentapeptide repeats (8 copies)
Representative CDS sequence
>Potri.008G058800.4 pacid=42807694 polypeptide=Potri.008G058800.4.p locus=Potri.008G058800 ID=Potri.008G058800.4.v4.1 annot-version=v4.1
ATGGCTCTTCTTAACGTCTATTTATGTACAAAAATCCCACCAAAACCCCATCTCTCAATAACCAAACCTTCCCTCTCAATCCCACACTTGCCTTCTCTAT
CCTTCTCTCACTGTGATAAGCCACAGGTACAGGCATTGATACCAAACAAGCAGCTGGTGGAAGATTTTGCAAAGACAGGCTTCCTTGCTATTCTCTCTGT
TTCTCTCTTTTTTACTGATCCTGCACTTGCATTCAAGGGAGGAGGACCGTATGGTTCTGAAGTTACGAGGGGTCAGGATCTTACTGGCAAGGATTTTAGT
GGCAGGACCTTGATTAAGCAAGATTTTAAGACGTCCATACTAAGACAAGCCAATTTCAAAGGTGCAAAATTGTTGGGAGCTAGTTTTTTCGATGCTGATT
TAACAGGGGCTGATCTTTCAGATGCTGACCTTAGAAGTGCAGATTTCTCATTGACAAATGTGACAAAGGCAAATTTGAGCAATGCTAACTTGGAAGGTGC
ACTTGCTACTGGCAACACATCTTTTAGAGGATCAAATATAACAGGAGCTGATTTCACAGATGTGCCCTTAAGGGAGGACCAACGTGAATACTTGTGTAAA
TTTGCAGATGGGGTGAATCCAACTACTGGAAATGCAACACGCGATACATTGCTTTGCAACTAG
AA sequence
>Potri.008G058800.4 pacid=42807694 polypeptide=Potri.008G058800.4.p locus=Potri.008G058800 ID=Potri.008G058800.4.v4.1 annot-version=v4.1
MALLNVYLCTKIPPKPHLSITKPSLSIPHLPSLSFSHCDKPQVQALIPNKQLVEDFAKTGFLAILSVSLFFTDPALAFKGGGPYGSEVTRGQDLTGKDFS
GRTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRSADFSLTNVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLREDQREYLCK
FADGVNPTTGNATRDTLLCN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44920 Tetratricopeptide repeat (TPR)... Potri.008G058800
[exp]
0 1
AT4G01650 Polyketide cyclase / dehydrase... Potri.014G110600
[exp]
1.00 0.9802
AT4G24175 unknown protein Potri.005G240800
[exp]
4.24 0.9619
AT5G66520 Tetratricopeptide repeat (TPR)... Potri.004G237000
[exp]
4.24 0.9635
AT1G17870 ATEGY3 ethylene-dependent gravitropis... Potri.001G289700
[exp]
4.89 0.9407
AT3G06730 TRXz, TRXP ,TRX... thioredoxin putative plastidic... Potri.001G028500
[exp]
6.32 0.9573
AT1G16080 unknown protein Potri.001G041140
[exp]
7.34 0.9290
AT5G63100 S-adenosyl-L-methionine-depend... Potri.015G082432
[exp]
8.00 0.9484
AT5G08540 unknown protein Potri.010G254800
[exp]
8.12 0.9525
AT5G17660 tRNA (guanine-N-7) methyltrans... Potri.013G070800
[exp]
9.16 0.9504
AT3G26740 CCL CCR-like (.1) Potri.001G066400
[exp]
9.89 0.9357 Pt-CR9.2

Potri.008G058800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.