Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11420 493 / 2e-171 Protein of unknown function (DUF604) (.1) AT2G37730 468 / 3e-161 Protein of unknown function (DUF604) (.1) AT5G41460 335 / 2e-109 Protein of unknown function (DUF604) (.1) AT4G11350 330 / 1e-107 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 324 / 2e-105 Protein of unknown function (DUF604) (.1) AT1G01570 321 / 1e-104 Protein of unknown function (DUF604) (.1) AT4G15240 313 / 2e-101 Protein of unknown function (DUF604) (.1) AT1G33250 314 / 5e-101 Protein of unknown function (DUF604) (.1) AT1G07850 298 / 3e-95 Protein of unknown function (DUF604) (.1) AT4G00300 294 / 4e-91 fringe-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199900 [exp] 812 / 0 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 469 / 2e-162 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 468 / 8e-162 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 343 / 5e-113 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 341 / 6e-112 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 338 / 6e-111 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 319 / 7e-104 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 318 / 7e-103 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 314 / 5e-102 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002713 [exp] 508 / 7e-178 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10030153 [exp] 369 / 4e-126 AT2G37730 305 / 6e-101 Protein of unknown function (DUF604) (.1) Lus10024364 [exp] 347 / 5e-117 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 336 / 1e-109 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10032293 [exp] 335 / 1e-109 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 323 / 8e-105 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 321 / 4e-104 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 302 / 4e-97 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 302 / 1e-96 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 284 / 2e-90 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.008G058900.1 pacid=42806233 polypeptide=Potri.008G058900.1.p locus=Potri.008G058900 ID=Potri.008G058900.1.v4.1 annot-version=v4.1 ATGAGTCAGACGCGTTTACAACCGAATCATGACCCGGCCAAAAAACTTGGACTGTTCGCTCTCCCTGAAAAAACCTGCGAGGTAATTTCATATCTCACGA GAATGTCTCTCCTCTTTTGTCTCATTTCCTCAATATCTCTCGTCCTCTACACCACTTTTTTCTCCAGCAACCAAACCCAATTCTGGCCCCCCTTTCCCCA CCCGACCCGAATCGAAACCCAACTCAGATCCAGCCAGCCCACAAACATCTTCCACATCCTTTTTTGCATCGGTGGATCAGCCGCAACGTGGCACGATCGT AGCCGTTATAGCTCTACATGGTGGGTCCCAAATGTTACGCGAGGGTTTGTTTGGCTTGACCAAGAAACCAACAGTACCCAGACCAATAAGAACGTGCCAG CTGTCATGGTGTCATCTCCAGAGTGGACTCGGTTTAAATTTTCTAGTTCAAGATCAGCGGTCAGGATTGCTAGGGTCATAAGTGATAGCGTCAAATTACG GTTGCCTCGTGTGAGGTGGTTTGTGATGGGAGATGATGACACGGTGTATTACACTGACAACCTAGTTTCAGTGTTGTCGAGGTACGATCATAATCAAATG TGGTACATTGGAGGTAACTCTGAGAGTGTGGAACAAGATGTGATGCATTCATATGATATGGCTTTTGGTGGGGGTGGATTTGCTCTTAGTTATCCATTGG CTGAGAGATTGGTCAGCATGCTGGACGGTTGTCTTGATAGGTATTATTATTTCTACGGTTCTGATCAGAGGATCTGGGCTTGTATAAGTGAGATTGGCGT GCCGCTAACAAGAGAACCTGGATTTCACCAGTTTGATATTAGAGGAAGCGTGTATGGTCTCCTAGCAGCACATCCTCTAGCCCCTCTTGTATCGCTCCAC CACCTTGACAATTTGGAGCCATTGTTTCCCGATCACAGCCGAATAGACTCCCTAAAAACCATAAATCGGGCATACCAGGCTGACCCGCCCCGAATTTTTC AACAAACATTCTGTCACGACTACAAGCGGAAATGGTCAATATCCATAGCATGGGGCTACACAGTTCAGCTGTACACCTTATTGTTGCCTGCCAAGGACTT GCAAACGCCAGTACGGACGTTCAAGACGTGGCGGAGTTGGAGCGATGGACCATTCACATTCAATACCCGACCCACGGAGGCTGACCATTGTAAACAGCCC GTTGTTTTTATGCTTGAGCAGGCTAAGGAAGTGGGCATTAATGGATCCTTGACTAGTTACACGAGGATAGTGCAGAAGCCAGGGAAGACTTGTAATACAG CAAGCTATGCCCAAGCAATGTCAGTGCAGAGAATTCTTGTATCTTCCTTGAAGGTGGGGCCCGATTATTGGAAAAAGGCACCAAGAAGATACTGCTGCGA GTTAATGAATAAAGGGAGCATAAAGAAGAGCAGTATGCAGATTAGGATTAGGAAATGCAGGAACTGGGAAACTGTTACTTCTAGGTAG
AA sequence Show only first row Show all	>Potri.008G058900.1 pacid=42806233 polypeptide=Potri.008G058900.1.p locus=Potri.008G058900 ID=Potri.008G058900.1.v4.1 annot-version=v4.1 MSQTRLQPNHDPAKKLGLFALPEKTCEVISYLTRMSLLFCLISSISLVLYTTFFSSNQTQFWPPFPHPTRIETQLRSSQPTNIFHILFCIGGSAATWHDR SRYSSTWWVPNVTRGFVWLDQETNSTQTNKNVPAVMVSSPEWTRFKFSSSRSAVRIARVISDSVKLRLPRVRWFVMGDDDTVYYTDNLVSVLSRYDHNQM WYIGGNSESVEQDVMHSYDMAFGGGGFALSYPLAERLVSMLDGCLDRYYYFYGSDQRIWACISEIGVPLTREPGFHQFDIRGSVYGLLAAHPLAPLVSLH HLDNLEPLFPDHSRIDSLKTINRAYQADPPRIFQQTFCHDYKRKWSISIAWGYTVQLYTLLLPAKDLQTPVRTFKTWRSWSDGPFTFNTRPTEADHCKQP VVFMLEQAKEVGINGSLTSYTRIVQKPGKTCNTASYAQAMSVQRILVSSLKVGPDYWKKAPRRYCCELMNKGSIKKSSMQIRIRKCRNWETVTSR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11420			Protein of unknown function (D...		Potri.008G058900 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014382 [exp]	9.79	0.7446
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	14.00	0.6904
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.002G134000 [exp]	16.12	0.7402
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.003G079800 [exp]	18.38	0.6939	HAT1.4
AT3G52260			Pseudouridine synthase family ...		Potri.008G042000 [exp]	19.62	0.7201
AT3G23940			dehydratase family (.1.2)		Potri.001G051700 [exp]	20.17	0.6829
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.017G026300 [exp]	22.13	0.6682
					Potri.001G092600 [exp]	23.23	0.7110
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.002G255800 [exp]	26.07	0.7261
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Potri.005G227600 [exp]	31.74	0.6788

Compare expression of checked genes

Potri.008G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.