Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07430 362 / 1e-122 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 352 / 8e-120 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 336 / 3e-113 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G59220 306 / 2e-101 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G51760 230 / 1e-71 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT4G26080 229 / 6e-71 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G57050 216 / 1e-66 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT1G17550 219 / 2e-66 HAB2 homology to ABI2 (.1) AT1G72770 219 / 3e-66 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G43900 149 / 4e-41 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199600 [exp] 538 / 0 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.009G037300 [exp] 391 / 3e-134 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.001G245200 [exp] 365 / 7e-124 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.012G131800 [exp] 246 / 5e-78 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.015G133900 [exp] 240 / 7e-76 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 237 / 4e-75 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 224 / 8e-70 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.001G092100 [exp] 215 / 3e-66 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.018G060300 [exp] 217 / 2e-65 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040270 [exp] 410 / 6e-142 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10004703 [exp] 401 / 2e-138 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040738 [exp] 370 / 9e-126 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10016493 [exp] 367 / 1e-124 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10012962 [exp] 215 / 4e-66 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10025000 [exp] 216 / 8e-65 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10019017 [exp] 211 / 1e-64 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10026447 [exp] 213 / 9e-64 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10034965 [exp] 191 / 2e-57 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10003399 [exp] 186 / 1e-56 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.008G059200.1 pacid=42806084 polypeptide=Potri.008G059200.1.p locus=Potri.008G059200 ID=Potri.008G059200.1.v4.1 annot-version=v4.1 ATGGCTGGGATTTGCTGCGGAGTTGTTGCTGAGAATGAAGCAGCTGCAGCAGTTGAGGCAAGGTCACGAGCATCAAGACGCAGGAGATTAGAACTCCGGT TGGTTTCCGACGTGTCTGTTCCACCGTCGACGATTTTGGATGTCGCTCCGGCGAAAAGGAAGAAACTCGAGTTGTTTCCCATTCCCATCTCACGTGATTG TGGTAACGCAGTAGAAAACTGCAAAAGAATTGAAGAAAATAAAAACAATAGCATCTCGGATTCAAGTAAACCAGAATCTGTGAAATTGAAAGAAGCTCTT AAATTCGGCATGACTTCTGTTTGTGGTAGAAGAAGAGATATGGAAGACGCCGTTTCGATACACACTTCTTTTACTACAAAAAACACCTCGTATTTTGGTG TTTTCGACGGTCATGGTTGCTCACATGTGGCGATGAAGTGTAGAGATCGGTTGCATGAGATAGTAAAACAAGAAGTTGAAGGTTTTAAAGAAGAAGAAAG TGTAGAATGGAAGGAAACTATGGAGAGAAGTTTTGTAGAGATGGATAAAGAAGTGGGTAATTGGTGCGTTGAAGGAGAAAACTGTTCTACTTGTAGGTGT GGGTTACAGACGCCACAAGGCGACGCCGTTGGATCTACTGCTGTGGTTGCTGTGGTGACGCCTGAGAAGATTATTGTCTCCAACTGTGGCGATTCTCGTG CCGTGCTTTGTCGAAACGGTGTCGCTATTCCTCTCTCCTCTGATCACAAGCCTGATCGACCAGATGAATTGCTTCGAATCCAAGAAGCTGGTGGGCGTGT AATTTATTGGGATGGCCCAAGAGTCCTTGGTGTTTTGGCCATGTCTAGAGCCATAGGTGACAATTACTTGAAGCCCTACGTCATACCGGAACCGGAAGTG ACTGTGACGGAACGGATGGAGGAGGATGAGTGTTTGATATTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAATGACACTGCTTGTGGGGTTGTGCGAA TGTGCCTCCGTGCCCAAAAGCCACCTTCACCACCAGGTTCTAATGGCGCCCTTGGGAGCTCTGATAAGGCCTGCTCAGATGCGTCAGTTCTGTTGACTAA GTTGGCCTTGGCTAGACATAGCACGGACAATATTAGTGTTGTTGTTGTGGATTTGAGAAGAAATCAACATTAA
AA sequence Show only first row Show all	>Potri.008G059200.1 pacid=42806084 polypeptide=Potri.008G059200.1.p locus=Potri.008G059200 ID=Potri.008G059200.1.v4.1 annot-version=v4.1 MAGICCGVVAENEAAAAVEARSRASRRRRLELRLVSDVSVPPSTILDVAPAKRKKLELFPIPISRDCGNAVENCKRIEENKNNSISDSSKPESVKLKEAL KFGMTSVCGRRRDMEDAVSIHTSFTTKNTSYFGVFDGHGCSHVAMKCRDRLHEIVKQEVEGFKEEESVEWKETMERSFVEMDKEVGNWCVEGENCSTCRC GLQTPQGDAVGSTAVVAVVTPEKIIVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRIQEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVIPEPEV TVTERMEEDECLILASDGLWDVVSNDTACGVVRMCLRAQKPPSPPGSNGALGSSDKACSDASVLLTKLALARHSTDNISVVVVDLRRNQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.008G059200 [exp]	0	1
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.001G245200 [exp]	3.60	0.8484
AT1G60420			DC1 domain-containing protein ...		Potri.005G244700 [exp]	5.91	0.8150
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.009G037300 [exp]	6.92	0.8214
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	6.92	0.8145	Pt-ABF2.1
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	7.61	0.8222
AT3G27250			unknown protein		Potri.001G334500 [exp]	8.24	0.8196
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	9.79	0.7842	ABF1.1
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.002G125400 [exp]	13.74	0.7792	ABF2.2
					Potri.004G216601 [exp]	20.49	0.7300
AT2G04240		XERICO	RING/U-box superfamily protein...		Potri.014G170400 [exp]	20.73	0.7749

Compare expression of checked genes

Potri.008G059200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.