Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39760 548 / 0 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT5G19000 447 / 3e-156 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G06190 441 / 8e-154 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT3G03740 413 / 5e-142 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT3G43700 385 / 4e-132 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G21010 382 / 8e-131 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT5G52330 53 / 2e-07 TRAF-like superfamily protein (.1.2) AT5G06600 51 / 1e-06 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G17380 47 / 9e-06 TRAF-like family protein (.1) AT5G19330 48 / 1e-05 ARIA ARM repeat protein interacting with ABF2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199200 [exp] 736 / 0 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G029500 [exp] 465 / 2e-163 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 446 / 5e-156 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.009G156500 [exp] 423 / 6e-147 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 415 / 7e-144 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 397 / 2e-136 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 193 / 5e-59 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.005G210000 [exp] 54 / 1e-07 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 51 / 1e-06 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004701 [exp] 624 / 0 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10040267 [exp] 624 / 0 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10021946 [exp] 449 / 5e-157 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10008421 [exp] 412 / 3e-141 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10003365 [exp] 412 / 4e-141 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10041235 [exp] 214 / 2e-67 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10042583 [exp] 53 / 4e-07 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 50 / 2e-06 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10034070 [exp] 50 / 2e-06 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 50 / 2e-06 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.008G059600.1 pacid=42806294 polypeptide=Potri.008G059600.1.p locus=Potri.008G059600 ID=Potri.008G059600.1.v4.1 annot-version=v4.1 ATGGACGATTTCAAGGGAGATGTAGATAAGGAGTCGTGTTCGAAGTCAATAAACGAGACGGTGAATGGGTCTCACCAGTTTACGATAAAAGGGTATTCAT TAGCGAAAGGAATGGGAGCTGGGAGATGCATACCGAGTGATGTTTTCAACGTGGGTGGTTATGATTGGGCGATTTATTTTTACCCAGATGGGAAAAACCC TGAGGATAGCTCGATGTATGTGTCGGTTTTTATTGCGTTAGCGAGCGAAGGAACGGATGTTAGGGCTTTGTTCGAGTTGACGCTGGTGGATCAGAGTGGG AAAGGGAAGCATAAAGTACATAGTCATTTCGATCGTGCGTTGGAGAGTGGACCTTATTCATTGAAGTACAGAGGCAGCATGTGGGGTTACAAACGTTTCT TCCGAAGGACAACCTTGGAAACTTCTGATTATCTGAAGGATGACTGCCTTATCATGAACTGCACTGTTGGAGTTGTCAGAACTCGTCTTGAAGGACCAAA ACAGTACTCCATTTCAGTTCCACCTTCAGACATGGGTTGGGGTTTTAAAGAACTACTGGAGTCTGAATCTGGTTGTGACATAGATTTCCAGGTTGGTGAT GAAACGTTTAGAGCTCATAAGCTGATCCTTGCTGCTCGTTCACCTGTTTTCAGAGCTCAATTTTTTGGACTTGTCGGGGATCCTAACATGGATAAAGTAG TAGTGAAGGATGTTGATCCCCTGATATTCAAGGCAATGCTTCTGTTTATATACACAGACAAACTTCCTGATGCACATGAAATAACTGGCTCGACATCAAT GTGCACATCCACCAATATGGTGCAGCATCTGTTGGCTGTCTCTGACCTTTACAATTTAGATCGATTGAAATTGTTATGTGAAGCAAAGTTGTGTGAGGAA CTCAGTGCCGAGAATGTGGCAACAACACTGGCATTGGCTGAGCAGCATCAGTGCATGCAACTGAAGGCCATCTGTTTGAAATTTGCAGCAAATCCAGCGA ACTTGGGAGCGGTAATGCAGTCAGAAGGGTTCCGACACTTGGAGGAGAGCTGCCCTTCAATGTTATGTGAGTTGCTGAAGACACTTGCTTCTGGAGATGA GAACTCAAGTCTTCTGTCAGGTAGGAAGAGGAGTGGCAGCAGTTTACTTGGGGTTGATCTAGCGGATGGGGCTCCAGCAGAATCAGCAAATCCCAATGGC AGGCGTTTGAGGAGGCGGTTTTAG
AA sequence Show only first row Show all	>Potri.008G059600.1 pacid=42806294 polypeptide=Potri.008G059600.1.p locus=Potri.008G059600 ID=Potri.008G059600.1.v4.1 annot-version=v4.1 MDDFKGDVDKESCSKSINETVNGSHQFTIKGYSLAKGMGAGRCIPSDVFNVGGYDWAIYFYPDGKNPEDSSMYVSVFIALASEGTDVRALFELTLVDQSG KGKHKVHSHFDRALESGPYSLKYRGSMWGYKRFFRRTTLETSDYLKDDCLIMNCTVGVVRTRLEGPKQYSISVPPSDMGWGFKELLESESGCDIDFQVGD ETFRAHKLILAARSPVFRAQFFGLVGDPNMDKVVVKDVDPLIFKAMLLFIYTDKLPDAHEITGSTSMCTSTNMVQHLLAVSDLYNLDRLKLLCEAKLCEE LSAENVATTLALAEQHQCMQLKAICLKFAANPANLGAVMQSEGFRHLEESCPSMLCELLKTLASGDENSSLLSGRKRSGSSLLGVDLADGAPAESANPNG RRLRRRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.008G059600 [exp]	0	1
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Potri.010G099000 [exp]	1.73	0.8708
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.002G116400 [exp]	2.44	0.8344
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.008G185400 [exp]	2.64	0.8307
AT5G13310			unknown protein		Potri.003G163100 [exp]	4.58	0.8424
AT3G29270			RING/U-box superfamily protein...		Potri.004G125400 [exp]	7.07	0.8351
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	7.21	0.8127
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	8.71	0.8439
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Potri.003G122300 [exp]	11.61	0.7803
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	14.96	0.8410
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.003G115500 [exp]	16.37	0.7654

Compare expression of checked genes

Potri.008G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.